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nMOLDYN
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Module Hierarchy
nMOLDYN
nMOLDYN.Analysis
nMOLDYN.Analysis.Analysis
:
This modules implements the base class for all the analysis available in nMOLDYN.
nMOLDYN.Analysis.Dynamics
:
Collections of classes for the determination of dynamics-related properties.
nMOLDYN.Analysis.NMR
:
Collections of classes for the determination of NMR-related properties.
nMOLDYN.Analysis.Scattering
:
Collections of classes for the determination of scattering-related properties.
nMOLDYN.Analysis.Slave
:
This modules contains the functions used by Pyro slave to perform analysis remotely.
nMOLDYN.Analysis.Structure
:
Collections of classes for the determination of structure-related properties.
nMOLDYN.Analysis.Template
:
This modules implements the estimate, serial and parrallel templates for all analysis.
nMOLDYN.Core
nMOLDYN.Core.Chemistry
:
This modules implements the functions and procedures that are related to chemistry.
nMOLDYN.Core.Config
:
This modules implements the procedures that handles nMOLDYN PREFERENCES.
nMOLDYN.Core.Error
nMOLDYN.Core.IOFiles
:
This module implements IO-related classes, functions and procedures.
nMOLDYN.Core.Logger
:
This module implements the classes used to handle the nMOLDYN logger.
nMOLDYN.Core.Mathematics
:
This modules implements the mathematics-related classes, functions and procedures.
nMOLDYN.Core.Misc
:
This modules implements the functions and procedures that can not be classified anywhere else in the library.
nMOLDYN.Core.Preferences
:
This modules stores some the nMOLDYN PREFERENCES variables that will be used throughout all nMOLDYN code.
nMOLDYN.GUI
nMOLDYN.GUI.ASCIIToNetCDFConversionDialog
:
This modules implements I{File-->Convert ASCII to NetCDF} dialog.
nMOLDYN.GUI.AnalysisBenchmarkDialog
:
This modules implements I{Help-->nMOLDYN benchmark} dialog.
nMOLDYN.GUI.AnalysisDialog
:
This modules implements I{Analysis-->selected analysis} dialog.
nMOLDYN.GUI.AnimationDialog
:
This modules implements I{View-->Animation} dialog.
nMOLDYN.GUI.CheckJobsStatusDialog
:
This modules implements I{Help-->Check job status} dialog.
nMOLDYN.GUI.GeneralInformationsDialog
:
This modules implements I{Help-->About nMOLDYN} dialog.
nMOLDYN.GUI.HTMLReader
nMOLDYN.GUI.HTMLReader.mfxtools
nMOLDYN.GUI.HTMLReader.mfxutil
nMOLDYN.GUI.HTMLReader.tkconst
nMOLDYN.GUI.HTMLReader.tkfont
nMOLDYN.GUI.HTMLReader.tkhtml
nMOLDYN.GUI.HTMLReader.tkinit
nMOLDYN.GUI.HTMLReader.tkutil
nMOLDYN.GUI.HTMLReader.tkwidget
nMOLDYN.GUI.HTMLReader.util
nMOLDYN.GUI.HTMLReader.version
nMOLDYN.GUI.MainDialog
:
This is where the main window of nMOLDYN is defined.
nMOLDYN.GUI.NetCDFToASCIIConversionDialog
:
This modules implements I{File-->Convert NetCDF to ASCII} dialog.
nMOLDYN.GUI.PDBSnapshotGeneratorDialog
:
This modules implements I{File-->Frame snapshot} dialog.
nMOLDYN.GUI.PlotNetCDFVariableDialog
:
This modules implements I{View-->Plot} dialog.
nMOLDYN.GUI.PreferencesDialog
:
This modules implements I{File-->Preferences} dialog.
nMOLDYN.GUI.PyroServerDialog
:
This modules implements I{View-->Animation} dialog.
nMOLDYN.GUI.SelectionDialog
:
This modules implements the atom selection dialog used in almost all nMOLDYN analysis.
nMOLDYN.GUI.Tags
nMOLDYN.GUI.TrajectoryConversionDialog
:
This modules implements I{File --> Trajectory conversion --> converter} dialog.
nMOLDYN.GUI.ViewEffectiveModeDialog
:
This modules implements I{View --> Effective Mode} dialog.
nMOLDYN.GUI.Widgets
:
This module implements all classes used for the generation of combo widgets.
nMOLDYN.Tests
nMOLDYN.Tests.ARA
nMOLDYN.Tests.ARA.TestsContents
nMOLDYN.Tests.ARA.runTests
nMOLDYN.Tests.AVACF
nMOLDYN.Tests.AVACF.TestsContents
nMOLDYN.Tests.AVACF.runTests
nMOLDYN.Tests.AnalysisTests
:
Test cases for analysis modules.
nMOLDYN.Tests.BuildTestCases
nMOLDYN.Tests.DCSF
nMOLDYN.Tests.DCSF.TestsContents
nMOLDYN.Tests.DCSF.runTests
nMOLDYN.Tests.DISF
nMOLDYN.Tests.DISF.TestsContents
nMOLDYN.Tests.DISF.runTests
nMOLDYN.Tests.DISFG
nMOLDYN.Tests.DISFG.TestsContents
nMOLDYN.Tests.DISFG.runTests
nMOLDYN.Tests.DOS
nMOLDYN.Tests.DOS.TestsContents
nMOLDYN.Tests.DOS.runTests
nMOLDYN.Tests.EISF
nMOLDYN.Tests.EISF.TestsContents
nMOLDYN.Tests.EISF.runTests
nMOLDYN.Tests.MSD
nMOLDYN.Tests.MSD.TestsContents
nMOLDYN.Tests.MSD.runTests
nMOLDYN.Tests.StabilityTests
:
Test cases for stability of the current version of nMOLDYN versus nMoldyn v2.1.0, the last stable release of nMoldyn.
nMOLDYN.Tests.VACF
nMOLDYN.Tests.VACF.TestsContents
nMOLDYN.Tests.VACF.runTests
nMOLDYN.__pkginfo__
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