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  Contents
- The nMOLDYN main window
- File-Directory selection window
- Example of a MMTK trajectory set file
- The Amber to MMTK converter dialog
- The CHARMM to MMTK converter dialog
- The DL_POLY to MMTK converter dialog
- Example of a DL_POLY/FIELD file
- The Discover to MMTK converter dialog
- The Forcite to MMTK converter dialog
- The NAMD to MMTK converter dialog
- The VASP to MMTK converter dialog
- The frame extraction dialog
- The NetCDF to ASCII conversion dialog
- The ASCII to NetCDF conversion dialog
- Example of an ASCII file that can be converted to a NetCDF file
- The Preferences dialog
- The three preferences sections
- Example of a preferences file
- The subset selection dialog
- The subset selection dialog for a selection from a selection file
- Example of a subset selection file
- The subset selection dialog for a selection from the loaded trajectory
- The subset selection dialog for a selection from an expression string
- The deuteration selection dialog
- The deuteration selection dialog for a selection from a selection file
- Example of a deuteration selection file
- The deuteration selection dialog for a selection from the loaded trajectory
- The deuteration selection dialog for a selection from an expression string
- The group selection dialog
- The group selection dialog for a selection from a selection file
- Example of a group selection file
- The group selection dialog for a selection from the loaded trajectory
- The group selection dialog for a selection from an expression string
- Examples of calculated MSD with nMOLDYN
- The MSD analysis dialog
- The RMSD analysis dialog
- The ROG analysis dialog
- The AC analysis dialog
- The VACF analysis dialog
- The DOS analysis dialog
- The PBFT analysis dialog
- The GMFT analysis dialog
- The RBT analysis dialog
- The COMT analysis dialog
- The ARA analysis dialog
- The QHA analysis dialog
- The RCF analysis dialog
- The AVACF analysis dialog
- The ADOS analysis dialog
- The DCSF analysis dialog
- The DCSFAR analysis dialog
- The DISF analysis dialog
- The DISFAR analysis dialog
- The DISFG analysis dialog
- The EISF analysis dialog
- The SCSF analysis dialog
- The SSCSF analysis dialog
- The PDF analysis dialog
- The CN analysis dialog
- The SD analysis dialog
- The SFA analysis dialog
- The OP analysis dialog
- The OPCM analysis dialog
- The plot dialog
- The plot settings dialog
- The export plot dialog
- The trajectory animation dialog
- The effective mode viewer dialog
- The analysis benchmark dialog
- The about dialog
- Example of autostart file
- Example of input file
pellegrini eric
2009-10-06