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List of Figures

  1. The nMOLDYN main window
  2. File-Directory selection window
  3. Example of a MMTK trajectory set file
  4. The Amber to MMTK converter dialog
  5. The CHARMM to MMTK converter dialog
  6. The DL_POLY to MMTK converter dialog
  7. Example of a DL_POLY/FIELD file
  8. The Discover to MMTK converter dialog
  9. The Forcite to MMTK converter dialog
  10. The NAMD to MMTK converter dialog
  11. The VASP to MMTK converter dialog
  12. The frame extraction dialog
  13. The NetCDF to ASCII conversion dialog
  14. The ASCII to NetCDF conversion dialog
  15. Example of an ASCII file that can be converted to a NetCDF file
  16. The Preferences dialog
  17. The three preferences sections
  18. Example of a preferences file
  19. The subset selection dialog
  20. The subset selection dialog for a selection from a selection file
  21. Example of a subset selection file
  22. The subset selection dialog for a selection from the loaded trajectory
  23. The subset selection dialog for a selection from an expression string
  24. The deuteration selection dialog
  25. The deuteration selection dialog for a selection from a selection file
  26. Example of a deuteration selection file
  27. The deuteration selection dialog for a selection from the loaded trajectory
  28. The deuteration selection dialog for a selection from an expression string
  29. The group selection dialog
  30. The group selection dialog for a selection from a selection file
  31. Example of a group selection file
  32. The group selection dialog for a selection from the loaded trajectory
  33. The group selection dialog for a selection from an expression string
  34. Examples of calculated MSD with nMOLDYN
  35. The MSD analysis dialog
  36. The RMSD analysis dialog
  37. The ROG analysis dialog
  38. The AC analysis dialog
  39. The VACF analysis dialog
  40. The DOS analysis dialog
  41. The PBFT analysis dialog
  42. The GMFT analysis dialog
  43. The RBT analysis dialog
  44. The COMT analysis dialog
  45. The ARA analysis dialog
  46. The QHA analysis dialog
  47. The RCF analysis dialog
  48. The AVACF analysis dialog
  49. The ADOS analysis dialog
  50. The DCSF analysis dialog
  51. The DCSFAR analysis dialog
  52. The DISF analysis dialog
  53. The DISFAR analysis dialog
  54. The DISFG analysis dialog
  55. The EISF analysis dialog
  56. The SCSF analysis dialog
  57. The SSCSF analysis dialog
  58. The PDF analysis dialog
  59. The CN analysis dialog
  60. The SD analysis dialog
  61. The SFA analysis dialog
  62. The OP analysis dialog
  63. The OPCM analysis dialog
  64. The plot dialog
  65. The plot settings dialog
  66. The export plot dialog
  67. The trajectory animation dialog
  68. The effective mode viewer dialog
  69. The analysis benchmark dialog
  70. The about dialog
  71. Example of autostart file
  72. Example of input file


pellegrini eric 2009-10-06