Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format | Best Site per Sequence |
FIMO version 5.5.5, (Release date: Thu Sep 14 08:48:04 2023 +1000)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE memechip_example_output_files/Klf1.fna
Database contains 904 sequences, 452000 residues
MOTIFS memechip_example_output_files/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
WGGGTGTGGYYS | 12 | TGGGTGTGGCTG |
NWGATAAG | 8 | CAGATAAG |
CCWCCCCTCCCCCTC | 15 | CCACCCCTCCCCCTC |
Random model letter frequencies (memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
NWGATAAG | MEME-2 | chr16 | - | 12052333 | 12052340 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr17 | + | 12397973 | 12397980 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr19 | - | 24354256 | 24354263 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 32169131 | 32169138 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr16 | + | 32509274 | 32509281 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr16 | - | 32510145 | 32510152 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 34638699 | 34638706 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr17 | + | 36139153 | 36139160 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr17 | - | 37006353 | 37006360 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 37127458 | 37127465 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 37405293 | 37405300 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr6 | + | 38874341 | 38874348 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr19 | + | 55940487 | 55940494 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr3 | + | 60623752 | 60623759 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 62325950 | 62325957 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 64827032 | 64827039 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 65203462 | 65203469 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr14 | - | 71023830 | 71023837 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 71081623 | 71081630 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr15 | + | 73573715 | 73573722 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr9 | + | 75406772 | 75406779 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr1 | - | 77295360 | 77295367 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr18 | + | 78548257 | 78548264 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr14 | + | 79703161 | 79703168 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr1 | - | 92186193 | 92186200 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr16 | - | 92716217 | 92716224 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 93306628 | 93306635 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 94859084 | 94859091 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 101355938 | 101355945 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 104332700 | 104332707 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 110976644 | 110976651 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 111007773 | 111007780 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr9 | + | 114376115 | 114376122 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 121295704 | 121295711 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 122895876 | 122895883 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 128112954 | 128112961 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr4 | - | 129141106 | 129141113 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 139672880 | 139672887 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 140280282 | 140280289 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 173211156 | 173211163 | 1.6e-05 | 0.209 | CAGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 19832422 | 19832429 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 27985293 | 27985300 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 28267080 | 28267087 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | + | 32702253 | 32702260 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 32702282 | 32702289 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 32716544 | 32716551 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 38900914 | 38900921 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr15 | + | 38999431 | 38999438 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chrX | + | 39372753 | 39372760 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chrX | - | 39372849 | 39372856 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr6 | - | 41654335 | 41654342 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr12 | + | 41846459 | 41846466 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 56247765 | 56247772 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 59011095 | 59011102 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 59915839 | 59915846 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 60589217 | 60589224 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr14 | + | 61273047 | 61273054 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 61379974 | 61379981 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 62325909 | 62325916 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | + | 62326282 | 62326289 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr15 | - | 66969381 | 66969388 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr3 | + | 68858867 | 68858874 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr14 | + | 69923063 | 69923070 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr1 | - | 77295521 | 77295528 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 84652226 | 84652233 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 85054515 | 85054522 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr17 | + | 87913344 | 87913351 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr15 | - | 91082699 | 91082706 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 95195401 | 95195408 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 96735287 | 96735294 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 96809403 | 96809410 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 96809459 | 96809466 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 96888684 | 96888691 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 103854191 | 103854198 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr4 | - | 111174209 | 111174216 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 115368093 | 115368100 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr8 | + | 125244430 | 125244437 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 132521549 | 132521556 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr6 | + | 135115923 | 135115930 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 135734046 | 135734053 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 139930479 | 139930486 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 140280334 | 140280341 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 144333315 | 144333322 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 150491915 | 150491922 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 154285937 | 154285944 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr1 | - | 157198902 | 157198909 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 172173993 | 172174000 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 172174041 | 172174048 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 180447333 | 180447340 | 3.19e-05 | 0.209 | CTGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 3866625 | 3866632 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 8631929 | 8631936 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr4 | - | 9588294 | 9588301 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr16 | + | 10384461 | 10384468 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr19 | + | 10736601 | 10736608 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 16685469 | 16685476 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr19 | - | 17398037 | 17398044 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr9 | + | 21069619 | 21069626 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr17 | - | 24340089 | 24340096 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr19 | + | 24609411 | 24609418 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 28463355 | 28463362 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 31712397 | 31712404 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 32145857 | 32145864 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr16 | - | 34031798 | 34031805 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr1 | - | 36977331 | 36977338 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 39901755 | 39901762 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr10 | - | 40924918 | 40924925 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr12 | - | 41693277 | 41693284 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr12 | + | 41693520 | 41693527 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr4 | - | 42890741 | 42890748 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr9 | - | 44096715 | 44096722 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 53194021 | 53194028 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr19 | - | 53260173 | 53260180 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 53840218 | 53840225 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr19 | + | 56466260 | 56466267 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 59011055 | 59011062 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr10 | - | 60612429 | 60612436 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr14 | + | 61272959 | 61272966 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 69186916 | 69186923 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr14 | - | 70506949 | 70506956 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr9 | + | 70774808 | 70774815 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 73580945 | 73580952 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr13 | - | 76003446 | 76003453 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr18 | - | 80417135 | 80417142 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr8 | + | 83025438 | 83025445 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 89056794 | 89056801 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr12 | + | 90222860 | 90222867 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr12 | - | 90222892 | 90222899 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 90524586 | 90524593 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 97307711 | 97307718 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 97964244 | 97964251 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 103324506 | 103324513 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 104819777 | 104819784 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 104890500 | 104890507 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 105995024 | 105995031 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 106743015 | 106743022 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 108345052 | 108345059 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr10 | + | 110604525 | 110604532 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr6 | - | 117858737 | 117858744 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 118241533 | 118241540 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr9 | - | 121335782 | 121335789 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 121365903 | 121365910 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 121964006 | 121964013 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr10 | - | 127624599 | 127624606 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 134264550 | 134264557 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr4 | - | 134537974 | 134537981 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 135847022 | 135847029 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 137731017 | 137731024 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr3 | + | 138480134 | 138480141 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 139969709 | 139969716 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 169314583 | 169314590 | 4.79e-05 | 0.209 | GAGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 3522486 | 3522493 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr17 | + | 5112286 | 5112293 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr16 | - | 8687078 | 8687085 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 33616511 | 33616518 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr15 | - | 36250891 | 36250898 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr9 | + | 40980713 | 40980720 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr17 | - | 43466887 | 43466894 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 46420051 | 46420058 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr6 | + | 57695592 | 57695599 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 68709970 | 68709977 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr14 | + | 71023920 | 71023927 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr8 | + | 83024310 | 83024317 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr6 | + | 86027949 | 86027956 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 87495102 | 87495109 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr10 | + | 93585737 | 93585744 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr13 | - | 94151421 | 94151428 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 97380869 | 97380876 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 100351582 | 100351589 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr3 | - | 104477761 | 104477768 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 106743089 | 106743096 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 122895829 | 122895836 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 129513383 | 129513390 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 130961727 | 130961734 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 130961815 | 130961822 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 134369323 | 134369330 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr7 | - | 139930665 | 139930672 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 144580012 | 144580019 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr6 | + | 146179216 | 146179223 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chrX | + | 146984376 | 146984383 | 6.39e-05 | 0.234 | GTGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 17335068 | 17335075 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr13 | - | 23643835 | 23643842 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr16 | - | 30565924 | 30565931 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr11 | - | 32156320 | 32156327 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr14 | - | 32982231 | 32982238 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr12 | - | 33905766 | 33905773 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr16 | + | 34031876 | 34031883 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr6 | - | 38874286 | 38874293 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr19 | + | 42304831 | 42304838 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 44017245 | 44017252 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr19 | + | 44460583 | 44460590 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr14 | - | 55043585 | 55043592 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 59915810 | 59915817 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr9 | + | 65063756 | 65063763 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 72859245 | 72859252 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr13 | - | 73612997 | 73613004 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr3 | + | 79383887 | 79383894 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr13 | - | 94151651 | 94151658 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 101177047 | 101177054 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 104819788 | 104819795 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 107138755 | 107138762 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 111007889 | 111007896 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 115468437 | 115468444 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr14 | - | 119195527 | 119195534 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr1 | + | 122155989 | 122155996 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 132521631 | 132521638 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr5 | - | 143814401 | 143814408 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr6 | - | 145703335 | 145703342 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 148957068 | 148957075 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr2 | - | 167169430 | 167169437 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr1 | - | 196502203 | 196502210 | 8.06e-05 | 0.252 | TAGATAAG |
NWGATAAG | MEME-2 | chr13 | + | 20242161 | 20242168 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 24164673 | 24164680 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr8 | - | 24255037 | 24255044 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr6 | + | 38861073 | 38861080 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr9 | - | 66764141 | 66764148 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 68709963 | 68709970 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 69793514 | 69793521 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr8 | + | 73367527 | 73367534 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 74652387 | 74652394 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr12 | - | 82044573 | 82044580 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr3 | + | 96233088 | 96233095 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr7 | + | 104332849 | 104332856 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr8 | + | 107824075 | 107824082 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr9 | - | 107997473 | 107997480 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr11 | + | 115374936 | 115374943 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr4 | - | 118241324 | 118241331 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr4 | + | 128533140 | 128533147 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr5 | + | 137731157 | 137731164 | 9.74e-05 | 0.279 | TTGATAAG |
NWGATAAG | MEME-2 | chr2 | + | 152650723 | 152650730 | 9.74e-05 | 0.279 | TTGATAAG |
Command line:
fimo --verbosity 1 --oc memechip_example_output_files/fimo_out_2 --bgfile memechip_example_output_files/background --motif NWGATAAG memechip_example_output_files/meme_out/meme.xml memechip_example_output_files/Klf1.fna
Settings:
output_directory = memechip_example_output_files/fimo_out_2 | MEME file name = memechip_example_output_files/meme_out/meme.xml | sequence file name = memechip_example_output_files/Klf1.fna |
background file name = memechip_example_output_files/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.