Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format Best Site per Sequence



FIMO - Motif search tool

FIMO version 5.5.5, (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE nrmix.nseqs.100.100bp.seed.1.fa
Database contains 2100 sequences, 210000 residues

MOTIFS xstreme_example_output_files/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
TTTTYTTTTYTTTYW 15 TTTTTTTTTTTTTCT
VATGACTCAG 10 GATGACTCAG
SCCCCGCCCCC 11 GCCCCGCCCCC
CCASYAGRKGGCRSY 15 CCACCAGGGGGCGCT
CTTATCT 7 CTTATCT
GACTACAWYTCCCAG 15 GACTACATCTCCCAG
TGCACTCCAGCCTGG 15 TGCACTCCAGCCTGG
AAASAGGAAGT 11 AAACAGGAAGT
GCGCMTGCGCG 11 GCGCCTGCGCG
RGCTCACTGCAGCCT 15 AGCTCACTGCAGCCT

Random model letter frequencies (xstreme_example_output_files/background):
A 0.222 C 0.278 G 0.278 T 0.222


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CCASYAGRKGGCRSY MEME-4 14 - 106873495 106873509 4.2e-09 0.000757 CCACCAGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 1 + 161197123 161197137 4.2e-09 0.000757 CCACCAGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 14 - 106873458 106873472 6.54e-09 0.000785 CCACTAGGGGGCGCC
CCASYAGRKGGCRSY MEME-4 6 - 33995374 33995388 1.24e-08 0.00112 CCACCAGGGGGCGCC
CCASYAGRKGGCRSY MEME-4 11 + 76518427 76518441 2.14e-08 0.00154 CCACCAGAGGGCGCT
CCASYAGRKGGCRSY MEME-4 3 - 195641867 195641881 3.71e-08 0.00217 CCACCAGGGGGCACC
CCASYAGRKGGCRSY MEME-4 1 + 247535997 247536011 4.44e-08 0.00217 CCACCAGAGGGCGCC
CCASYAGRKGGCRSY MEME-4 12 - 104026354 104026368 4.82e-08 0.00217 CCAGTAGAGGGCGCT
CCASYAGRKGGCRSY MEME-4 11 - 123349089 123349103 1.03e-07 0.00377 CCACTAGATGGCACT
CCASYAGRKGGCRSY MEME-4 1 + 224701388 224701402 1.05e-07 0.00377 CCAGCAGGGGGCACC
CCASYAGRKGGCRSY MEME-4 9 + 119499308 119499322 1.19e-07 0.00377 CCAGCAGAGGGCGCC
CCASYAGRKGGCRSY MEME-4 1 + 202243731 202243745 1.34e-07 0.00377 CCAGCAGAGGGCACT
CCASYAGRKGGCRSY MEME-4 14 + 98604912 98604926 1.41e-07 0.00377 CCAGTAGGGGGCAGT
CCASYAGRKGGCRSY MEME-4 7 + 116570459 116570473 1.47e-07 0.00377 CCAGCAGGTGGCACT
CCASYAGRKGGCRSY MEME-4 1 - 27423861 27423875 1.74e-07 0.00388 CCACCAGAGGGCAGT
CCASYAGRKGGCRSY MEME-4 2 - 27906361 27906375 1.74e-07 0.00388 CCACCAGAGGGCAGT
CCASYAGRKGGCRSY MEME-4 11 + 111435850 111435864 1.89e-07 0.00388 CCACCAGGTGGCAGT
CCASYAGRKGGCRSY MEME-4 1 + 46502696 46502710 1.94e-07 0.00388 CCACCAGAGGGCGCA
CCASYAGRKGGCRSY MEME-4 10 + 81134303 81134317 2.54e-07 0.00477 CCACCAGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 7 - 148224713 148224727 2.65e-07 0.00477 CCAGCAGATGGCGCC
CCASYAGRKGGCRSY MEME-4 19 + 2051148 2051162 3.02e-07 0.00494 CCAGAAGAGGGCGCT
CCASYAGRKGGCRSY MEME-4 X + 48774475 48774489 3.02e-07 0.00494 CCGCCAGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 19 + 14311003 14311017 3.21e-07 0.00502 CCACTAGGGGGCGTT
CCASYAGRKGGCRSY MEME-4 12 + 6532678 6532692 3.65e-07 0.00547 CCACAAGAGGGCACC
CCASYAGRKGGCRSY MEME-4 12 - 121668054 121668068 4.06e-07 0.00563 CCACTAGGGGGAGGC
CCASYAGRKGGCRSY MEME-4 1 - 203185304 203185318 4.06e-07 0.00563 CCACTAGATGGCAGC
CCASYAGRKGGCRSY MEME-4 17 + 44270701 44270715 4.55e-07 0.00569 CCGCCAGGGGGCGCC
CCASYAGRKGGCRSY MEME-4 6 - 30845463 30845477 4.62e-07 0.00569 CCACTTGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 20 - 35402586 35402600 4.62e-07 0.00569 CCACTTGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 16 + 629057 629071 4.8e-07 0.00569 CCACAAGGGGGCAGC
CCASYAGRKGGCRSY MEME-4 8 + 128746154 128746168 4.9e-07 0.00569 CCAGTAGAGGGCACA
CCASYAGRKGGCRSY MEME-4 10 + 60059250 60059264 5.22e-07 0.00587 CCACCAGGGGGAGGC
CCASYAGRKGGCRSY MEME-4 2 - 233305235 233305249 5.59e-07 0.00603 CCAGCAGGTGGCAGC
CCASYAGRKGGCRSY MEME-4 1 - 17955900 17955914 5.71e-07 0.00603 CCAGGAGAGGGCGCT
CCASYAGRKGGCRSY MEME-4 5 - 9544554 9544568 5.97e-07 0.00603 CCGGCAGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 6 - 24766908 24766922 6.1e-07 0.00603 CCACTAGGTGGCAAT
CCASYAGRKGGCRSY MEME-4 2 + 113357578 113357592 6.19e-07 0.00603 CCAGGAGGTGGCGCT
CCASYAGRKGGCRSY MEME-4 5 - 82726197 82726211 6.44e-07 0.00611 CCACTAGGTGGCGTT
CCASYAGRKGGCRSY MEME-4 3 - 38697191 38697205 6.85e-07 0.00633 CCAGCAGATGGCAGT
CCASYAGRKGGCRSY MEME-4 1 + 175115672 175115686 7.81e-07 0.00662 CCAGCAGAGGGCGCG
CCASYAGRKGGCRSY MEME-4 10 + 103892184 103892198 7.93e-07 0.00662 CCACTAGGGGGTGGT
CCASYAGRKGGCRSY MEME-4 1 + 234634784 234634798 7.93e-07 0.00662 CCACCAGATGGCGCG
CCASYAGRKGGCRSY MEME-4 2 - 97616882 97616896 7.95e-07 0.00662 CCACTAGGTGGCGGG
CCASYAGRKGGCRSY MEME-4 19 - 50486866 50486880 8.28e-07 0.00662 CCACAAGGGGGCGAT
CCASYAGRKGGCRSY MEME-4 8 + 98905399 98905413 8.28e-07 0.00662 CCTCAAGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 19 + 10338181 10338195 8.94e-07 0.00681 CCAGTTGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 14 + 78488312 78488326 9.07e-07 0.00681 CCAGGAGGTGGCGCC
CCASYAGRKGGCRSY MEME-4 18 + 21202178 21202192 9.29e-07 0.00681 CCACCAGAGGGCGGG
CCASYAGRKGGCRSY MEME-4 4 - 86965138 86965152 9.29e-07 0.00681 CCACAAGGTGGCAGC
CCASYAGRKGGCRSY MEME-4 1 + 65896770 65896784 9.46e-07 0.00681 CCACTAGAGGGTACT
CCASYAGRKGGCRSY MEME-4 14 + 88958517 88958531 9.73e-07 0.00687 CCACCAGGGGGAACA
CCASYAGRKGGCRSY MEME-4 19 - 35626256 35626270 1.1e-06 0.00762 CCACCAGAGGGAGCA
CCASYAGRKGGCRSY MEME-4 3 + 129209009 129209023 1.12e-06 0.00762 CCACTAGATGGCAGA
CCASYAGRKGGCRSY MEME-4 16 - 1614305 1614319 1.17e-06 0.00779 CCAGCAGGGGGTGCC
CCASYAGRKGGCRSY MEME-4 2 - 121716214 121716228 1.23e-06 0.00808 CCAGTTGGGGGCGCC
CCASYAGRKGGCRSY MEME-4 20 + 4741175 4741189 1.28e-06 0.00825 CCACGAGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 6 + 26026472 26026486 1.32e-06 0.00834 CCGGCAGGGGGCGGT
CCASYAGRKGGCRSY MEME-4 10 + 82204412 82204426 1.34e-06 0.00834 CCTCTAGGTGGCAGT
CCASYAGRKGGCRSY MEME-4 15 - 52432014 52432028 1.38e-06 0.00845 TCACCAGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 10 - 79734139 79734153 1.42e-06 0.00849 CCAGTAGGAGGCGCT
CCASYAGRKGGCRSY MEME-4 1 - 201012012 201012026 1.44e-06 0.00849 CCAGCAGGGGGAAGC
CCASYAGRKGGCRSY MEME-4 10 + 134468195 134468209 1.51e-06 0.00849 CCAGGAGATGGCGCC
CCASYAGRKGGCRSY MEME-4 7 - 6475235 6475249 1.53e-06 0.00849 CCGCCAGGGGGCAGC
CCASYAGRKGGCRSY MEME-4 5 - 56433904 56433918 1.53e-06 0.00849 CCAGAAGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 7 - 1209484 1209498 1.58e-06 0.00849 CCGCCAGGGGGAGCT
CCASYAGRKGGCRSY MEME-4 9 + 89048854 89048868 1.58e-06 0.00849 CCAGTAGAGGGAGCA
CCASYAGRKGGCRSY MEME-4 6 + 125474642 125474656 1.58e-06 0.00849 CCGGCAGGTGGCGCC
CCASYAGRKGGCRSY MEME-4 15 + 94707431 94707445 1.61e-06 0.00854 CCTGCAGGGGGCAGT
CCASYAGRKGGCRSY MEME-4 2 + 44706513 44706527 1.65e-06 0.00861 CCAGTAGAGGGTACT
CCASYAGRKGGCRSY MEME-4 3 - 50259222 50259236 1.68e-06 0.00867 CCTCTAGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 2 - 132249784 132249798 1.75e-06 0.00884 CCGCTAGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 2 + 171217816 171217830 1.77e-06 0.00884 CCAGCAGAGGGCAAC
CCASYAGRKGGCRSY MEME-4 14 + 34145209 34145223 1.87e-06 0.00925 CCTCTAGGTGGAGCT
CCASYAGRKGGCRSY MEME-4 16 - 89233839 89233853 1.9e-06 0.00926 CCGGCAGGGGGCAGT
CCASYAGRKGGCRSY MEME-4 19 - 38747100 38747114 2e-06 0.00947 CCGCCAGAGGGCGCA
CCASYAGRKGGCRSY MEME-4 19 + 39600993 39601007 2e-06 0.00947 CCAGCAGGTGGCGTC
CCASYAGRKGGCRSY MEME-4 22 + 39858315 39858329 2.07e-06 0.00966 CCTCCAGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 X - 149885283 149885297 2.22e-06 0.0103 CCGCAAGAGGGCGCC
CCASYAGRKGGCRSY MEME-4 X - 49969141 49969155 2.25e-06 0.0103 CCAGCAGGGGGAGAT
CCASYAGRKGGCRSY MEME-4 16 + 23814799 23814813 2.28e-06 0.0103 CCAGAAGGGGGTGCT
CCASYAGRKGGCRSY MEME-4 9 + 112665804 112665818 2.35e-06 0.0104 CCACTAGATGGCCCT
CCASYAGRKGGCRSY MEME-4 6 + 150044953 150044967 2.49e-06 0.0109 CCAGTAGGGGGAGAC
CCASYAGRKGGCRSY MEME-4 12 - 119850963 119850977 2.66e-06 0.0115 ACAGTAGGTGGCGCT
CCASYAGRKGGCRSY MEME-4 17 + 13241092 13241106 2.71e-06 0.0116 CCACTAGATGGCTCC
CCASYAGRKGGCRSY MEME-4 7 - 116767611 116767625 2.74e-06 0.0116 CCAGCAGGGGGTGCA
CCASYAGRKGGCRSY MEME-4 8 + 22941635 22941649 2.82e-06 0.0118 CCTGTAGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 10 + 101244940 101244954 3.06e-06 0.0123 CCTCCAGGTGGAGCC
CCASYAGRKGGCRSY MEME-4 3 - 150213344 150213358 3.06e-06 0.0123 CCACCAGGTGGAGAC
CCASYAGRKGGCRSY MEME-4 1 + 171614033 171614047 3.06e-06 0.0123 TCAGTAGAGGGCGCT
CCASYAGRKGGCRSY MEME-4 1 - 246862442 246862456 3.08e-06 0.0123 TCACTAGATGGCGCT
CCASYAGRKGGCRSY MEME-4 7 - 28133233 28133247 3.2e-06 0.0127 CCACAGGGGGGCGCT
CCASYAGRKGGCRSY MEME-4 7 - 101457375 101457389 3.29e-06 0.0129 CCGGTAGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 1 - 39283798 39283812 3.35e-06 0.0129 CCGCTAGATGGCAGC
CCASYAGRKGGCRSY MEME-4 X - 110087567 110087581 3.35e-06 0.0129 CCTCTAGGGGGAGCA
CCASYAGRKGGCRSY MEME-4 6 + 148466038 148466052 3.45e-06 0.013 ACACCAGGGGGCGCA
CCASYAGRKGGCRSY MEME-4 2 - 73162075 73162089 3.49e-06 0.013 CCACAAGGGGGTGGC
CCASYAGRKGGCRSY MEME-4 1 - 229650400 229650414 3.49e-06 0.013 CCACAAGGGGGAGGA
CCASYAGRKGGCRSY MEME-4 4 - 15397816 15397830 3.54e-06 0.013 CCTCCAGATGGAGCT
CCASYAGRKGGCRSY MEME-4 9 - 136218819 136218833 4.25e-06 0.0153 CCAGTAGGGGGTGGA
CCASYAGRKGGCRSY MEME-4 9 - 136218819 136218833 4.25e-06 0.0153 CCAGTAGGGGGTGGA
CCASYAGRKGGCRSY MEME-4 14 - 25148096 25148110 4.37e-06 0.0154 ACACTAGAGGGCGCA
CCASYAGRKGGCRSY MEME-4 5 + 30401580 30401594 4.5e-06 0.0154 CCAGCTGAGGGCGGC
CCASYAGRKGGCRSY MEME-4 15 + 44195954 44195968 4.5e-06 0.0154 CCACAAGGGGTCGCT
CCASYAGRKGGCRSY MEME-4 19 - 51597969 51597983 4.5e-06 0.0154 CCACAAGGGGTCGCT
CCASYAGRKGGCRSY MEME-4 12 - 58169632 58169646 4.5e-06 0.0154 CCACTAGGTGGAAGG
CCASYAGRKGGCRSY MEME-4 4 - 55299841 55299855 4.61e-06 0.0157 CCAGCAGGAGGCAGT
CCASYAGRKGGCRSY MEME-4 16 - 30609451 30609465 4.74e-06 0.016 CCTGCAGGGGGCAGA
CCASYAGRKGGCRSY MEME-4 10 - 80962249 80962263 4.8e-06 0.016 CCGCTTGGGGGCGCC
CCASYAGRKGGCRSY MEME-4 8 + 6920999 6921013 5.03e-06 0.0166 CCACCAGGAGGAGCC
CCASYAGRKGGCRSY MEME-4 1 + 32405398 32405412 5.17e-06 0.0169 CCACCAGGTGGCCCA
CCASYAGRKGGCRSY MEME-4 6 - 31036614 31036628 5.37e-06 0.0174 CCACTAGGGGGCTAC
CCASYAGRKGGCRSY MEME-4 15 + 65611142 65611156 6.02e-06 0.0194 CCACTGGGTGGCAGC
CCASYAGRKGGCRSY MEME-4 4 - 17473945 17473959 6.13e-06 0.0195 CCACTGGGTGGAGCT
CCASYAGRKGGCRSY MEME-4 22 - 43742408 43742422 6.44e-06 0.0202 TCACCAGGGGGAGCC
CCASYAGRKGGCRSY MEME-4 16 - 71571559 71571573 6.44e-06 0.0202 ACACCAGGTGGCAGC
CCASYAGRKGGCRSY MEME-4 1 + 149224347 149224361 6.5e-06 0.0202 CCGGCAGGGGGAAGT
CCASYAGRKGGCRSY MEME-4 1 + 109820037 109820051 6.74e-06 0.0208 CCGCCAGGTGGCAAC
CCASYAGRKGGCRSY MEME-4 18 + 11732929 11732943 6.84e-06 0.0208 CCGCCTGGTGGCGCT
CCASYAGRKGGCRSY MEME-4 20 - 2432761 2432775 6.88e-06 0.0208 CCGGTAGAGGGTGCT
CCASYAGRKGGCRSY MEME-4 9 - 26856387 26856401 7.22e-06 0.0217 CCACTTGGTGGTGCT
CCASYAGRKGGCRSY MEME-4 22 + 38503152 38503166 7.49e-06 0.022 CCAGCAGAGGGCCCA
CCASYAGRKGGCRSY MEME-4 22 + 20134767 20134781 7.69e-06 0.022 CCACAGGGGGGCAGT
CCASYAGRKGGCRSY MEME-4 8 - 25333165 25333179 7.69e-06 0.022 CCACTGGGGGGCAGA
CCASYAGRKGGCRSY MEME-4 9 + 33403328 33403342 7.69e-06 0.022 CCTGTAGAGGGTGCC
CCASYAGRKGGCRSY MEME-4 15 - 56344952 56344966 7.77e-06 0.022 CCACTAGATGGAGAA
CCASYAGRKGGCRSY MEME-4 6 - 99873655 99873669 7.77e-06 0.022 CCGGAAGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 5 + 137946844 137946858 7.82e-06 0.022 CCTGGAGGGGGAGCT
CCASYAGRKGGCRSY MEME-4 2 - 175197345 175197359 7.82e-06 0.022 CCAGCAGGGGGACCC
CCASYAGRKGGCRSY MEME-4 14 - 105956880 105956894 7.98e-06 0.0223 CCGCCAGGAGGCGCC
CCASYAGRKGGCRSY MEME-4 4 - 106117873 106117887 8.13e-06 0.0225 CCAGTAGGGGGAGAG
CCASYAGRKGGCRSY MEME-4 19 - 31187402 31187416 8.27e-06 0.0226 CCTCTAGGTGGCTCC
CCASYAGRKGGCRSY MEME-4 19 - 35503843 35503857 8.27e-06 0.0226 CCACAAGGAGGCAGC
CCASYAGRKGGCRSY MEME-4 20 - 37360096 37360110 8.44e-06 0.0228 CCGCTAGGGGGCGAG
CCASYAGRKGGCRSY MEME-4 11 + 45894242 45894256 8.67e-06 0.0233 CCAGTGGAGGGCAGC
CCASYAGRKGGCRSY MEME-4 11 + 125792905 125792919 8.94e-06 0.0238 TCACAAGAGGGCGGT
CCASYAGRKGGCRSY MEME-4 11 - 12915595 12915609 9.07e-06 0.0238 CCTGAAGATGGCAGT
CCASYAGRKGGCRSY MEME-4 1 + 46907920 46907934 9.07e-06 0.0238 ACTCCAGGTGGCGCT
CCASYAGRKGGCRSY MEME-4 3 - 60039261 60039275 9.39e-06 0.0243 CCACAAGGAGGCACA
CCASYAGRKGGCRSY MEME-4 20 - 61922566 61922580 9.39e-06 0.0243 CCAGAGGAGGGCGCC
CCASYAGRKGGCRSY MEME-4 4 - 10551258 10551272 9.55e-06 0.0246 CCACCAGGTGGAGAG
CCASYAGRKGGCRSY MEME-4 17 - 62503500 62503514 9.7e-06 0.0248 ACTCTAGAGGGCACT
CCASYAGRKGGCRSY MEME-4 11 + 62283079 62283093 1.01e-05 0.0255 CCACCAGATGGATCC
CCASYAGRKGGCRSY MEME-4 8 - 29172209 29172223 1.05e-05 0.0262 CCACTAGATGGCCAT
CCASYAGRKGGCRSY MEME-4 12 - 54140349 54140363 1.05e-05 0.0262 CCACAGGAGGGCGGC
CCASYAGRKGGCRSY MEME-4 1 - 244615422 244615436 1.05e-05 0.0262 CCTGCAGATGGCAGA
CCASYAGRKGGCRSY MEME-4 2 + 99807010 99807024 1.11e-05 0.0273 CCTGTAGGGGGCGAG
CCASYAGRKGGCRSY MEME-4 11 - 17374891 17374905 1.12e-05 0.0273 CCGGGAGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 16 - 84220524 84220538 1.12e-05 0.0273 CCGGGAGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 10 + 72968793 72968807 1.14e-05 0.0273 CCGCCTGGTGGCACC
CCASYAGRKGGCRSY MEME-4 7 + 141354249 141354263 1.14e-05 0.0273 ACTCTAGGGGGCAGT
CCASYAGRKGGCRSY MEME-4 12 - 93043715 93043729 1.16e-05 0.0276 CCACAGGGTGGCAGT
CCASYAGRKGGCRSY MEME-4 X - 151800918 151800932 1.2e-05 0.0284 CCACTAGAGGGCCTC
CCASYAGRKGGCRSY MEME-4 4 + 74021803 74021817 1.21e-05 0.0284 CCAGGAGGGGGTACA
CCASYAGRKGGCRSY MEME-4 22 - 19619566 19619580 1.22e-05 0.0285 CCAGGAGGTGGTGGC
CCASYAGRKGGCRSY MEME-4 9 - 131486945 131486959 1.35e-05 0.0315 CCTGTAGGTGGTGGC
CCASYAGRKGGCRSY MEME-4 18 + 3703624 3703638 1.37e-05 0.0315 CCGCCAGAGGGAGAC
CCASYAGRKGGCRSY MEME-4 19 - 41768127 41768141 1.37e-05 0.0315 CCACTGGAGGGCGTC
CCASYAGRKGGCRSY MEME-4 1 + 1790025 1790039 1.4e-05 0.0315 ACAGCAGATGGAGCT
CCASYAGRKGGCRSY MEME-4 6 + 34165424 34165438 1.4e-05 0.0315 CCAGGAGAGGGAGAC
CCASYAGRKGGCRSY MEME-4 14 + 24685104 24685118 1.41e-05 0.0315 CCTGGAGATGGCGCA
CCASYAGRKGGCRSY MEME-4 20 - 42073691 42073705 1.41e-05 0.0315 CCTGTAGGGGACGCT
CCASYAGRKGGCRSY MEME-4 3 + 150439067 150439081 1.48e-05 0.0328 ACACTAGAGGGAAGC
CCASYAGRKGGCRSY MEME-4 15 - 41032012 41032026 1.5e-05 0.0329 CCAGGAGAGGGAGTT
CCASYAGRKGGCRSY MEME-4 22 + 22555466 22555480 1.52e-05 0.0329 CCAGCAGGGGACGCG
CCASYAGRKGGCRSY MEME-4 16 + 88470225 88470239 1.52e-05 0.0329 CCGCCAGGGGGCCCA
CCASYAGRKGGCRSY MEME-4 3 + 194054160 194054174 1.52e-05 0.0329 CCACCGGGTGGCGGG
CCASYAGRKGGCRSY MEME-4 5 - 139069021 139069035 1.55e-05 0.0335 ACACCAGGGGGAGCG
CCASYAGRKGGCRSY MEME-4 3 + 168582714 168582728 1.63e-05 0.035 CCACAAGAGGGCCAT
CCASYAGRKGGCRSY MEME-4 2 + 241790601 241790615 1.66e-05 0.0353 CCGCTAGGTGTCACT
CCASYAGRKGGCRSY MEME-4 7 - 101459037 101459051 1.71e-05 0.0363 CCGCCAGGAGGCAGC
CCASYAGRKGGCRSY MEME-4 16 + 31466968 31466982 1.8e-05 0.0374 CCTCCGGGGGGAGCT
CCASYAGRKGGCRSY MEME-4 9 - 126964745 126964759 1.8e-05 0.0374 TCAGAAGGTGGCAGT
CCASYAGRKGGCRSY MEME-4 6 + 149886671 149886685 1.8e-05 0.0374 CCTCCAGGGGTCGGC
CCASYAGRKGGCRSY MEME-4 1 - 172370999 172371013 1.82e-05 0.0378 CCTGCTGAGGGCAGT
CCASYAGRKGGCRSY MEME-4 22 - 20098657 20098671 1.91e-05 0.0392 CCTGTAGGGGGCATG
CCASYAGRKGGCRSY MEME-4 4 + 169104845 169104859 1.91e-05 0.0392 CCACTAGATGTCACG
CCASYAGRKGGCRSY MEME-4 2 - 179279373 179279387 2.05e-05 0.0418 TCACTAGGGGGAGAC
CCASYAGRKGGCRSY MEME-4 7 + 139251410 139251424 2.1e-05 0.0425 CCAGCGGGGGGCATC
CCASYAGRKGGCRSY MEME-4 17 + 44270736 44270750 2.15e-05 0.0432 CCGCCAGGAGGCGCG
CCASYAGRKGGCRSY MEME-4 4 - 18023262 18023276 2.21e-05 0.0442 CCTCCGGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 1 + 227636760 227636774 2.23e-05 0.0443 CCCCCAGAGGGCACC
CCASYAGRKGGCRSY MEME-4 1 - 201191992 201192006 2.24e-05 0.0444 CCACTAGAGGGATTT
CCASYAGRKGGCRSY MEME-4 7 - 150759344 150759358 2.3e-05 0.045 CCACGTGGGGGCAGG
CCASYAGRKGGCRSY MEME-4 3 - 158152190 158152204 2.3e-05 0.045 TCGCTAGGTGGCGCA
CCASYAGRKGGCRSY MEME-4 1 + 47993323 47993337 2.33e-05 0.0455 ACTCTAGGGGGCGAC
CCASYAGRKGGCRSY MEME-4 8 - 40851240 40851254 2.37e-05 0.0459 CCACATGGTGGCAGG
CCASYAGRKGGCRSY MEME-4 17 + 70721592 70721606 2.39e-05 0.046 CCGCGTGGTGGCGCC
CCASYAGRKGGCRSY MEME-4 14 - 106873476 106873490 2.4e-05 0.046 ACACTAGGGGGCTCA
CCASYAGRKGGCRSY MEME-4 1 + 32405410 32405424 2.46e-05 0.0469 CCAGGAGGGGGTATT
CCASYAGRKGGCRSY MEME-4 18 - 59169715 59169729 2.63e-05 0.0496 ACAGGAGGTGGCAGC
CCASYAGRKGGCRSY MEME-4 9 + 140149476 140149490 2.63e-05 0.0496 CCGGGTGAGGGCGCT
CCASYAGRKGGCRSY MEME-4 10 - 98590275 98590289 2.67e-05 0.05 CCGCTAGGTGGTGGG
CCASYAGRKGGCRSY MEME-4 1 + 224701420 224701434 2.69e-05 0.0501 CCGGGAGAGGGCGTC
CCASYAGRKGGCRSY MEME-4 16 + 3151313 3151327 2.77e-05 0.0512 ACGCTAGGGGGCGTT
CCASYAGRKGGCRSY MEME-4 3 + 180520613 180520627 2.77e-05 0.0512 ACTCTAGATGGCAGC
CCASYAGRKGGCRSY MEME-4 17 - 38511240 38511254 2.87e-05 0.0526 CCACCGGGGGGCGTG
CCASYAGRKGGCRSY MEME-4 5 + 79174522 79174536 2.87e-05 0.0526 CCAGGTGAGGGCGAC
CCASYAGRKGGCRSY MEME-4 17 - 21142954 21142968 2.93e-05 0.0534 CCACTAGGGGTTACA
CCASYAGRKGGCRSY MEME-4 17 + 65713729 65713743 3e-05 0.0543 CCGCCAGAGGTCGCA
CCASYAGRKGGCRSY MEME-4 22 + 20960466 20960480 3.02e-05 0.0543 CCCCCAGAGGGCGCA
CCASYAGRKGGCRSY MEME-4 19 + 51614848 51614862 3.11e-05 0.0557 CCTGGTGGTGGCACT
CCASYAGRKGGCRSY MEME-4 15 - 70390110 70390124 3.13e-05 0.0558 CCACGTGGGGGCCCC
CCASYAGRKGGCRSY MEME-4 11 + 67121839 67121853 3.18e-05 0.0564 CCAGAAGAGGGAAAG
CCASYAGRKGGCRSY MEME-4 5 - 114598108 114598122 3.22e-05 0.0569 CCGGAAGGGGGCTGC
CCASYAGRKGGCRSY MEME-4 4 - 127503885 127503899 3.24e-05 0.057 CCACAAGTGGGAGCT
CCASYAGRKGGCRSY MEME-4 14 - 79163692 79163706 3.31e-05 0.0579 CCACTAGATGTCCCT
CCASYAGRKGGCRSY MEME-4 1 - 14660345 14660359 3.51e-05 0.061 CCTGTAGGGGGAAAG
CCASYAGRKGGCRSY MEME-4 6 - 1382019 1382033 3.55e-05 0.0615 CCGCGGGGTGGCGCC
CCASYAGRKGGCRSY MEME-4 15 - 83518354 83518368 3.61e-05 0.0622 CCTGAAGGTGGAGTT
CCASYAGRKGGCRSY MEME-4 5 + 149312309 149312323 3.65e-05 0.0626 CCAGCAGAGGGCCAG
CCASYAGRKGGCRSY MEME-4 7 - 142912116 142912130 3.68e-05 0.0628 CCACTAGTGGGCAGG
CCASYAGRKGGCRSY MEME-4 19 + 44617247 44617261 3.81e-05 0.0647 CCGGCAGGTGGATCC
CCASYAGRKGGCRSY MEME-4 4 + 55837764 55837778 3.89e-05 0.0657 CCACTAGAGGGACAA
CCASYAGRKGGCRSY MEME-4 7 + 142912121 142912135 4.13e-05 0.0695 CCACTAGTGGGCGAA
CCASYAGRKGGCRSY MEME-4 12 + 55118997 55119011 4.16e-05 0.0697 CCCCTAGATGGCAGC
CCASYAGRKGGCRSY MEME-4 22 + 38966233 38966247 4.24e-05 0.0705 CCAGCGGGTGGCGAG
CCASYAGRKGGCRSY MEME-4 17 + 37557770 37557784 4.27e-05 0.0705 CCGGGAGGGGGAGGG
CCASYAGRKGGCRSY MEME-4 12 - 56617972 56617986 4.27e-05 0.0705 CCCGCAGGGGGAGCC
CCASYAGRKGGCRSY MEME-4 16 - 2265120 2265134 4.3e-05 0.0705 CCACGTGGTGGCCCC
CCASYAGRKGGCRSY MEME-4 22 + 38966169 38966183 4.3e-05 0.0705 CCTGGAGGGGGCTCA
CCASYAGRKGGCRSY MEME-4 22 - 19619569 19619583 4.47e-05 0.0729 CCGCCAGGAGGTGGT
CCASYAGRKGGCRSY MEME-4 5 - 150494844 150494858 4.63e-05 0.0751 CTAGCAGGGGGCAGT
CCASYAGRKGGCRSY MEME-4 14 + 20923160 20923174 4.68e-05 0.0753 CCACGTGGGGGCTCA
CCASYAGRKGGCRSY MEME-4 18 + 60189952 60189966 4.68e-05 0.0753 CCCCCAGGGGGCGGG
CCASYAGRKGGCRSY MEME-4 16 + 71571563 71571577 4.75e-05 0.076 CCACCTGGTGTCAGC
CCASYAGRKGGCRSY MEME-4 7 + 101459103 101459117 4.96e-05 0.079 TCTCAAGATGGCGGC
CCASYAGRKGGCRSY MEME-4 11 + 65479184 65479198 5.03e-05 0.0798 CCACAAGGAGACGCC
CCASYAGRKGGCRSY MEME-4 1 - 178971866 178971880 5.16e-05 0.0815 CCTGCAGGGGTCGTT
CCASYAGRKGGCRSY MEME-4 6 - 150881040 150881054 5.3e-05 0.0833 CCACATGGAGGAACT
CCASYAGRKGGCRSY MEME-4 8 - 48873199 48873213 5.43e-05 0.085 CCTCCGGGAGGCGCC
CCASYAGRKGGCRSY MEME-4 7 + 75508130 75508144 5.5e-05 0.0857 CCGCGAGGAGGCGGA
CCASYAGRKGGCRSY MEME-4 1 - 32405394 32405408 5.61e-05 0.0867 CCACCTGGTGGTGAA
CCASYAGRKGGCRSY MEME-4 11 - 111435846 111435860 5.61e-05 0.0867 CCACCTGGTGGTGAA
CCASYAGRKGGCRSY MEME-4 2 - 74692126 74692140 5.74e-05 0.0884 CCGGCAGAGGGAGTG
CCASYAGRKGGCRSY MEME-4 2 + 175089297 175089311 5.79e-05 0.0887 CCACAAGGGGAAGAC
CCASYAGRKGGCRSY MEME-4 17 + 79071697 79071711 5.82e-05 0.0888 CCAGCGGGGGGTGGG
CCASYAGRKGGCRSY MEME-4 4 - 3939604 3939618 5.92e-05 0.09 CCAGAGGAGGGAGGA
CCASYAGRKGGCRSY MEME-4 20 - 48909010 48909024 5.96e-05 0.0902 CCGGAAGGGGTCAGC
CCASYAGRKGGCRSY MEME-4 1 + 201672019 201672033 6.07e-05 0.0915 CCTGCAGATGGTTCT
CCASYAGRKGGCRSY MEME-4 22 - 28838196 28838210 6.15e-05 0.0922 CCGCTGGGGGGCGAG
CCASYAGRKGGCRSY MEME-4 19 - 5271168 5271182 6.3e-05 0.0942 CCACAAGGGGTAATT
CCASYAGRKGGCRSY MEME-4 9 - 132975097 132975111 6.46e-05 0.0957 TCAGAAGGTGGAGGA
CCASYAGRKGGCRSY MEME-4 6 - 157744352 157744366 6.46e-05 0.0957 CCAGTTGGGGACGGA
CCASYAGRKGGCRSY MEME-4 19 + 17358632 17358646 6.58e-05 0.0963 CCGCCTGGGGGTGGA
CCASYAGRKGGCRSY MEME-4 9 - 114857148 114857162 6.58e-05 0.0963 TCACTAGGAGGCATT
CCASYAGRKGGCRSY MEME-4 7 - 137928172 137928186 6.58e-05 0.0963 CCAGCAGATGGTCAT
CCASYAGRKGGCRSY MEME-4 22 - 41682204 41682218 6.66e-05 0.0971 CCAGGGGAGGGCGAA
CCASYAGRKGGCRSY MEME-4 21 + 40159277 40159291 6.82e-05 0.099 CCTGGAGGTGGAATC
CCASYAGRKGGCRSY MEME-4 6 - 157744411 157744425 6.86e-05 0.0992 ACAGGAGGAGGCGGT
CCASYAGRKGGCRSY MEME-4 2 + 106810930 106810944 7.03e-05 0.101 CCGGAGGGGGGCACG
CCASYAGRKGGCRSY MEME-4 10 - 74114351 74114365 7.19e-05 0.103 CCTGGAGAAGGCACA
CCASYAGRKGGCRSY MEME-4 17 + 4883842 4883856 7.33e-05 0.104 CCACTGGGAGGCATC
CCASYAGRKGGCRSY MEME-4 3 + 150213348 150213362 7.33e-05 0.104 CCACCTGGTGGTTGT
CCASYAGRKGGCRSY MEME-4 9 + 36487795 36487809 7.38e-05 0.105 CCGCGAGGGGGCCGG
CCASYAGRKGGCRSY MEME-4 22 + 49448050 49448064 7.68e-05 0.108 CCACGGGAGGGAGGG
CCASYAGRKGGCRSY MEME-4 5 + 172410545 172410559 7.81e-05 0.11 TCACGTGGGGGCGCG
CCASYAGRKGGCRSY MEME-4 10 + 31531773 31531787 8e-05 0.112 CCAGCTGATGTCAGC
CCASYAGRKGGCRSY MEME-4 X + 107408558 107408572 8.14e-05 0.113 CCAGAAGATGGCCAG
CCASYAGRKGGCRSY MEME-4 7 - 148787736 148787750 8.14e-05 0.113 CCCGCAGGAGGCGCT
CCASYAGRKGGCRSY MEME-4 2 - 112792508 112792522 8.19e-05 0.113 TCACTAGAGGGCCTC
CCASYAGRKGGCRSY MEME-4 1 - 228271616 228271630 8.62e-05 0.118 ACAGCAGAGGGCCAC
CCASYAGRKGGCRSY MEME-4 11 - 65188611 65188625 8.67e-05 0.118 ACAGAAGGTGGTGAT
CCASYAGRKGGCRSY MEME-4 1 - 65896765 65896779 8.67e-05 0.118 CCTCTAGTGGGCATT
CCASYAGRKGGCRSY MEME-4 10 - 97515174 97515188 8.67e-05 0.118 CCTGCAGGAGACGCT
CCASYAGRKGGCRSY MEME-4 7 - 101151080 101151094 8.72e-05 0.118 ACCCTAGAGGGCGCC
CCASYAGRKGGCRSY MEME-4 1 - 39874212 39874226 8.82e-05 0.119 CCCGGAGAGGGCGCA
CCASYAGRKGGCRSY MEME-4 12 + 108522696 108522710 9.06e-05 0.122 ACAGAAGAGGACACT
CCASYAGRKGGCRSY MEME-4 17 - 75830844 75830858 9.12e-05 0.123 CCTGTAGGAGGAAGG
CCASYAGRKGGCRSY MEME-4 8 + 38226074 38226088 9.28e-05 0.124 CCACTTGAAGGAAAT
CCASYAGRKGGCRSY MEME-4 19 + 8276671 8276685 9.49e-05 0.126 CCTCCTGGAGGAGGT
CCASYAGRKGGCRSY MEME-4 3 + 194871089 194871103 9.49e-05 0.126 CCGCCTGGTGGCATG
CCASYAGRKGGCRSY MEME-4 10 + 45868626 45868640 9.54e-05 0.126 CCAGGAGTGGGCGGG
CCASYAGRKGGCRSY MEME-4 5 - 10607855 10607869 9.6e-05 0.126 TCACGAGAGGACGCC
CCASYAGRKGGCRSY MEME-4 7 + 5492570 5492584 9.65e-05 0.126 TCACTGGGTGGTACT
CCASYAGRKGGCRSY MEME-4 5 - 138738229 138738243 9.65e-05 0.126 TCCCTAGAGGGCGCC
CCASYAGRKGGCRSY MEME-4 20 - 49050199 49050213 9.86e-05 0.129 CCACTAGGTGACTGG

DEBUGGING INFORMATION

Command line:

fimo --verbosity 1 --oc xstreme_example_output_files/fimo_out_2 --bgfile xstreme_example_output_files/background --motif CCASYAGRKGGCRSY xstreme_example_output_files/meme_out/meme.xml nrmix.nseqs.100.100bp.seed.1.fa

Settings:

output_directory = xstreme_example_output_files/fimo_out_2 MEME file name = xstreme_example_output_files/meme_out/meme.xml sequence file name = nrmix.nseqs.100.100bp.seed.1.fa
background file name = xstreme_example_output_files/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


Go to top