Data Model version 2.1.2
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Class: MemopsRoot


    Unique root class, located at the top of the parent-child tree of objects. The  attributes adn operations are different in the File and Db Implementations
Attributes
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Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
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Appendix

Inheritance:


Details:

Parent: None
Main key: n/a
Mandatory Attributes: None
Partitions Children: True
Known Subclasses: None
Children:
link accessControlStores to class memops.api.AccessControl.AccessControlStore
link affiliationStores to class ccp.api.general.Affiliation.AffiliationStore
link analysisProfiles to class ccpnmr.api.AnalysisProfile.AnalysisProfile
link analysisProjectV3s to class ccpnmr.api.AnalysisV3.AnalysisProjectV3
link analysisProjects to class ccpnmr.api.Analysis.AnalysisProject
link analysisWindowStores to class ccpnmr.api.AnalysisWindow.AnalysisWindowStore
link annealProtocolStores to class molsim.api.AnnealProtocol.AnnealProtocolStore
link annotationStores to class ccp.api.general.Annotation.AnnotationStore
link chemCompCharges to class ccp.api.molecule.ChemCompCharge.ChemCompCharge
link chemCompCoords to class ccp.api.molecule.ChemCompCoord.ChemCompCoord
link chemComps to class ccp.api.molecule.ChemComp.ChemComp
link chemElementStores to class ccp.api.molecule.ChemElement.ChemElementStore
link citationStores to class ccp.api.general.Citation.CitationStore
link classifications to class ccp.api.lims.Classification.Classification
link crystallizationStores to class ccp.api.lims.Crystallization.CrystallizationStore
link dangleStores to class cambridge.api.Dangle.DangleStore
link dataLocationStores to class ccp.api.general.DataLocation.DataLocationStore
link databases to class ccp.api.general.DbRef.Database
link expBlueprintStores to class ccp.api.lims.ExpBlueprint.ExpBlueprintStore
link experimentStores to class ccp.api.lims.Experiment.ExperimentStore
link haddockProjects to class utrecht.api.Haddock.HaddockProject
link holderStores to class ccp.api.lims.Holder.HolderStore
link instrumentStores to class ccp.api.general.Instrument.InstrumentStore
link keywordDefinitionStores to class ccp.api.general.KeywordDefinition.KeywordDefinitionStore
link labeledMolecules to class ccp.api.molecule.LabeledMolecule.LabeledMolecule
link labelingSchemes to class ccp.api.molecule.ChemCompLabel.LabelingScheme
link layouts to class ccpnmr.api.AnalysisLayout.Layout
link locationStores to class ccp.api.lims.Location.LocationStore
link methodStores to class ccp.api.general.Method.MethodStore
link molSystemSymmetrySets to class molsim.api.Symmetry.MolSystemSymmetrySet
link molSystems to class ccp.api.molecule.MolSystem.MolSystem
link molecules to class ccp.api.molecule.Molecule.Molecule
link nameMappingStores to class ccpnmr.api.NameMapping.NameMappingStore
link nmrCalcStores to class ccp.api.nmr.NmrCalc.NmrCalcStore
link nmrConstraintStores to class ccp.api.nmr.NmrConstraint.NmrConstraintStore
link nmrEntryStores to class ccp.api.nmr.NmrEntry.NmrEntryStore
link nmrExpPrototypes to class ccp.api.nmr.NmrExpPrototype.NmrExpPrototype
link nmrProjects to class ccp.api.nmr.Nmr.NmrProject
link nmrReferenceStores to class ccp.api.nmr.NmrReference.NmrReferenceStore
link nmrScreens to class ccp.api.nmr.NmrScreen.NmrScreen
link packageLocators to class PackageLocator
link protocolStores to class ccp.api.lims.Protocol.ProtocolStore
link refDataStores to class ccp.api.lims.RefData.RefDataStore
link refSampleComponentStores to class ccp.api.lims.RefSampleComponent.RefSampleComponentStore
link repositories to class Repository
link sampleStores to class ccp.api.lims.Sample.SampleStore
link stereochemistryStores to class ccp.api.molecule.Stereochemistry.StereochemistryStore
link structureEnsembles to class ccp.api.molecule.MolStructure.StructureEnsemble
link targetStores to class ccp.api.lims.Target.TargetStore
link taxonomies to class ccp.api.general.Taxonomy.Taxonomy
link validationStores to class ccp.api.molecule.Validation.ValidationStore
link wmsProtocols to class cambridge.api.WmsProtocol.WmsProtocol
link wmsQueryStores to class cambridge.api.WmsQuery.WmsQueryStore
link wmsSegments to class cambridge.api.Wms.WmsSegment
Constructor: newObj = MemopsRoot( ... )

Attributes

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Attribute Type Multiplicity Description
accessControlOn Boolean 1..1 Is access control active?  
createdBy Word 1..1 user who created TopObject.  
currentGroupName Word 1..1 name of current group. Used for access control, record of who creates and modifies objects, etc.  
currentUserId Word 1..1 user Id for current user. Used for access control, record of who creates and modifies objects, etc.  
isLoaded Boolean 1..1 Implementation attribute, set automatically. True if the data in the Storage are loaded into memory. As data are loaded automatically, this attribute should be of interest only for the implementation.  
isModifiable Boolean 1..1 True if the data corresponding to the storage may be modified. If isModifiable is false for a given package, attemps to modify the data will raise an error. Note that isModifiable can be set to true even if the corresponding file is read-only. For a Project, this atribute defines whether the Implementation package (not the entire project contents) can be modified. If the Implementation package is Read-Only, this will prohibit many changes in the other packages as well. This parameter can be freely modified by users, so it is not a security feature, but rather a protection against accidental changes.  
isModified Boolean 1..1 Implementation attribute. True if the data corresponding to the Storage have been modified since being loaded. Serves to indicate which data need to be saved.  
isReading Boolean 1..1 Implementation attribute, set automatically. True if the data corresponding to the Storage are in the process of being read. As data loading is handled automatically, this attribute should be relevant only for the implementation, or possibly for programmers of multithreaded programs. Serves to suppress notifiers and validity checking during reading. Note that objects are not valid until the data loading is completed.  
lastUnlockedBy Word 0..1 User who last set TopObject.isModifiable to True. Used to track if data have been modified. Provided data have isModifiable set to False, any modification in the underlying data will show up on lastUnlockedBy.  
name Word 1..1 Memops root name - used in naming files etc  
override Boolean 1..1 Override switch - switches off validity and constraint checking. NB anyone setting override takes reponsibility for unsetting it again and ensuring that the final result is valid. It is strongly recommended to check the validity of any changes afterwards. NBNB TBD we need to prevent the storing of override=True data somehow.  

Inherited Attributes: classNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes

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Attribute Type Multiplicity Description
accessControlStores memops.api.AccessControl.AccessControlStore 0..* (Child link). child link  
activeRepositories Repository 0..* Repositories on package search path that contains a copy of TopObject  
affiliationStores ccp.api.general.Affiliation.AffiliationStore 0..* (Child link). child link  
analysisProfiles ccpnmr.api.AnalysisProfile.AnalysisProfile 0..* (Child link). child link  
analysisProjectV3s ccpnmr.api.AnalysisV3.AnalysisProjectV3 0..* (Child link). child link to class AnalysisProjectV3  
analysisProjects ccpnmr.api.Analysis.AnalysisProject 0..* (Child link). child link  
analysisWindowStores ccpnmr.api.AnalysisWindow.AnalysisWindowStore 0..* (Child link). child link to class AnalysisWindowStore  
annealProtocolStores molsim.api.AnnealProtocol.AnnealProtocolStore 0..* (Child link). child link  
annotationStores ccp.api.general.Annotation.AnnotationStore 0..* (Child link). child link  
chemCompCharges ccp.api.molecule.ChemCompCharge.ChemCompCharge 0..* (Child link). child link  
chemCompCoords ccp.api.molecule.ChemCompCoord.ChemCompCoord 0..* (Child link). child link  
chemComps ccp.api.molecule.ChemComp.ChemComp 0..* (Child link). child link  
chemElementStores ccp.api.molecule.ChemElement.ChemElementStore 0..* (Child link). child link  
citationStores ccp.api.general.Citation.CitationStore 0..* (Child link). child link  
classifications ccp.api.lims.Classification.Classification 0..* (Child link). child link  
crystallizationStores ccp.api.lims.Crystallization.CrystallizationStore 0..* (Child link). child link  
currentAccessControlStore memops.api.AccessControl.AccessControlStore 0..1 current accessControlStore - may be reset by implementation.  
currentAffiliationStore ccp.api.general.Affiliation.AffiliationStore 0..1 current affiliationStore - may be reset by implementation.  
currentAnalysisProfile ccpnmr.api.AnalysisProfile.AnalysisProfile 0..1 current analysisProfile - may be reset by implementation.  
currentAnalysisProject ccpnmr.api.Analysis.AnalysisProject 0..1 current analysisProject - may be reset by implementation.  
currentAnalysisProjectV3 ccpnmr.api.AnalysisV3.AnalysisProjectV3 0..1 current analysisProjectV3 - may be reset by implementation.  
currentAnalysisWindowStore ccpnmr.api.AnalysisWindow.AnalysisWindowStore 0..1 current analysisWindowStore - may be reset by implementation.  
currentAnnealProtocolStore molsim.api.AnnealProtocol.AnnealProtocolStore 0..1 current annealProtocolStore - may be reset by implementation.  
currentAnnotationStore ccp.api.general.Annotation.AnnotationStore 0..1 current annotationStore - may be reset by implementation.  
currentChemComp ccp.api.molecule.ChemComp.ChemComp 0..1 current chemComp - may be reset by implementation.  
currentChemCompCharge ccp.api.molecule.ChemCompCharge.ChemCompCharge 0..1 current chemCompCharge - may be reset by implementation.  
currentChemCompCoord ccp.api.molecule.ChemCompCoord.ChemCompCoord 0..1 current chemCompCoord - may be reset by implementation.  
currentChemElementStore ccp.api.molecule.ChemElement.ChemElementStore 0..1 current chemElementStore - may be reset by implementation.  
currentCitationStore ccp.api.general.Citation.CitationStore 0..1 current citationStore - may be reset by implementation.  
currentClassification ccp.api.lims.Classification.Classification 0..1 current classification - may be reset by implementation.  
currentCrystallizationStore ccp.api.lims.Crystallization.CrystallizationStore 0..1 current crystallizationStore - may be reset by implementation.  
currentDangleStore cambridge.api.Dangle.DangleStore 0..1 current dangleStore - may be reset by implementation.  
currentDataLocationStore ccp.api.general.DataLocation.DataLocationStore 0..1 current dataLocationStore - may be reset by implementation.  
currentDatabase ccp.api.general.DbRef.Database 0..1 current database - may be reset by implementation.  
currentExpBlueprintStore ccp.api.lims.ExpBlueprint.ExpBlueprintStore 0..1 current expBlueprintStore - may be reset by implementation.  
currentExperimentStore ccp.api.lims.Experiment.ExperimentStore 0..1 current experimentStore - may be reset by implementation.  
currentHaddockProject utrecht.api.Haddock.HaddockProject 0..1 current haddockProject - may be reset by implementation.  
currentHolderStore ccp.api.lims.Holder.HolderStore 0..1 current holderStore - may be reset by implementation.  
currentInstrumentStore ccp.api.general.Instrument.InstrumentStore 0..1 current instrumentStore - may be reset by implementation.  
currentKeywordDefinitionStore ccp.api.general.KeywordDefinition.KeywordDefinitionStore 0..1 current keywordDefinitionStore - may be reset by implementation.  
currentLabeledMolecule ccp.api.molecule.LabeledMolecule.LabeledMolecule 0..1 current labeledMolecule - may be reset by implementation.  
currentLabelingScheme ccp.api.molecule.ChemCompLabel.LabelingScheme 0..1 current labelingScheme - may be reset by implementation.  
currentLayout ccpnmr.api.AnalysisLayout.Layout 0..1 current layout - may be reset by implementation.  
currentLocationStore ccp.api.lims.Location.LocationStore 0..1 current locationStore - may be reset by implementation.  
currentMethodStore ccp.api.general.Method.MethodStore 0..1 current methodStore - may be reset by implementation.  
currentMolSystem ccp.api.molecule.MolSystem.MolSystem 0..1 current molSystem - may be reset by implementation.  
currentMolSystemSymmetrySet molsim.api.Symmetry.MolSystemSymmetrySet 0..1 current molSystemSymmetrySet - may be reset by implementation.  
currentMolecule ccp.api.molecule.Molecule.Molecule 0..1 current molecule - may be reset by implementation.  
currentNameMappingStore ccpnmr.api.NameMapping.NameMappingStore 0..1 current nameMappingStore - may be reset by implementation.  
currentNmrCalcStore ccp.api.nmr.NmrCalc.NmrCalcStore 0..1 current nmrCalcStore - may be reset by implementation.  
currentNmrConstraintStore ccp.api.nmr.NmrConstraint.NmrConstraintStore 0..1 current nmrConstraintStore - may be reset by implementation.  
currentNmrEntryStore ccp.api.nmr.NmrEntry.NmrEntryStore 0..1 current nmrEntryStore - may be reset by implementation.  
currentNmrExpPrototype ccp.api.nmr.NmrExpPrototype.NmrExpPrototype 0..1 current nmrExpPrototype - may be reset by implementation.  
currentNmrProject ccp.api.nmr.Nmr.NmrProject 0..1 current nmrProject - may be reset by implementation.  
currentNmrReferenceStore ccp.api.nmr.NmrReference.NmrReferenceStore 0..1 current nmrReferenceStore - may be reset by implementation.  
currentNmrScreen ccp.api.nmr.NmrScreen.NmrScreen 0..1 current nmrScreen - may be reset by implementation.  
currentProtocolStore ccp.api.lims.Protocol.ProtocolStore 0..1 current protocolStore - may be reset by implementation.  
currentRefDataStore ccp.api.lims.RefData.RefDataStore 0..1 current refDataStore - may be reset by implementation.  
currentRefSampleComponentStore ccp.api.lims.RefSampleComponent.RefSampleComponentStore 0..1 current refSampleComponentStore - may be reset by implementation.  
currentSampleStore ccp.api.lims.Sample.SampleStore 0..1 current sampleStore - may be reset by implementation.  
currentStereochemistryStore ccp.api.molecule.Stereochemistry.StereochemistryStore 0..1 current stereochemistryStore - may be reset by implementation.  
currentStructureEnsemble ccp.api.molecule.MolStructure.StructureEnsemble 0..1 current structureEnsemble - may be reset by implementation.  
currentTargetStore ccp.api.lims.Target.TargetStore 0..1 current targetStore - may be reset by implementation.  
currentTaxonomy ccp.api.general.Taxonomy.Taxonomy 0..1 current taxonomy - may be reset by implementation.  
currentValidationStore ccp.api.molecule.Validation.ValidationStore 0..1 current validationStore - may be reset by implementation.  
currentWmsProtocol cambridge.api.WmsProtocol.WmsProtocol 0..1 current wmsProtocol - may be reset by implementation.  
currentWmsQueryStore cambridge.api.WmsQuery.WmsQueryStore 0..1 current wmsQueryStore - may be reset by implementation.  
currentWmsSegment cambridge.api.Wms.WmsSegment 0..1 current wmsSegment - may be reset by implementation.  
dangleStores cambridge.api.Dangle.DangleStore 0..* (Child link). child link  
dataLocationStores ccp.api.general.DataLocation.DataLocationStore 0..* (Child link). child link  
databases ccp.api.general.DbRef.Database 0..* (Child link). child link  
expBlueprintStores ccp.api.lims.ExpBlueprint.ExpBlueprintStore 0..* (Child link). child link  
experimentStores ccp.api.lims.Experiment.ExperimentStore 0..* (Child link). child link  
haddockProjects utrecht.api.Haddock.HaddockProject 0..* (Child link). child link  
holderStores ccp.api.lims.Holder.HolderStore 0..* (Child link). child link  
instrumentStores ccp.api.general.Instrument.InstrumentStore 0..* (Child link). child link  
keywordDefinitionStores ccp.api.general.KeywordDefinition.KeywordDefinitionStore 0..* (Child link). child link  
labeledMolecules ccp.api.molecule.LabeledMolecule.LabeledMolecule 0..* (Child link). child link  
labelingSchemes ccp.api.molecule.ChemCompLabel.LabelingScheme 0..* (Child link). child link  
layouts ccpnmr.api.AnalysisLayout.Layout 0..* (Child link). child link to class Layout  
locationStores ccp.api.lims.Location.LocationStore 0..* (Child link). child link  
methodStores ccp.api.general.Method.MethodStore 0..* (Child link). child link  
molSystemSymmetrySets molsim.api.Symmetry.MolSystemSymmetrySet 0..* (Child link). child link  
molSystems ccp.api.molecule.MolSystem.MolSystem 0..* (Child link). child link  
molecules ccp.api.molecule.Molecule.Molecule 0..* (Child link). child link  
nameMappingStores ccpnmr.api.NameMapping.NameMappingStore 0..* (Child link). child link  
nmrCalcStores ccp.api.nmr.NmrCalc.NmrCalcStore 0..* (Child link). child link to class NmrCalcStore  
nmrConstraintStores ccp.api.nmr.NmrConstraint.NmrConstraintStore 0..* (Child link). child link  
nmrEntryStores ccp.api.nmr.NmrEntry.NmrEntryStore 0..* (Child link). child link  
nmrExpPrototypes ccp.api.nmr.NmrExpPrototype.NmrExpPrototype 0..* (Child link). child link  
nmrProjects ccp.api.nmr.Nmr.NmrProject 0..* (Child link). child link  
nmrReferenceStores ccp.api.nmr.NmrReference.NmrReferenceStore 0..* (Child link). child link  
nmrScreens ccp.api.nmr.NmrScreen.NmrScreen 0..* (Child link). child link  
packageLocator PackageLocator 1..1 Derived. Package locator relevant for MemopsRoot  
packageLocators PackageLocator 0..* (Child link). child link to class PackageLocator  
parent MemopsRoot 0..1 link to parent object - returns None  
protocolStores ccp.api.lims.Protocol.ProtocolStore 0..* (Child link). child link  
refDataStores ccp.api.lims.RefData.RefDataStore 0..* (Child link). child link  
refSampleComponentStores ccp.api.lims.RefSampleComponent.RefSampleComponentStore 0..* (Child link). child link  
repositories Repository 0..* (Child link). child link to class Repository  
sampleStores ccp.api.lims.Sample.SampleStore 0..* (Child link). child link  
stereochemistryStores ccp.api.molecule.Stereochemistry.StereochemistryStore 0..* (Child link). child link  
structureEnsembles ccp.api.molecule.MolStructure.StructureEnsemble 0..* (Child link). child link  
targetStores ccp.api.lims.Target.TargetStore 0..* (Child link). child link  
taxonomies ccp.api.general.Taxonomy.Taxonomy 0..* (Child link). child link to class Taxonomy  
topObjects TopObject 0..* All TopObjects of whatever kind (not including MemopsRoot)  
validationStores ccp.api.molecule.Validation.ValidationStore 0..* (Child link). child link  
wmsProtocols cambridge.api.WmsProtocol.WmsProtocol 0..* (Child link). child link to class WmsProtocol  
wmsQueryStores cambridge.api.WmsQuery.WmsQueryStore 0..* (Child link). child link to class WmsQueryStore  
wmsSegments cambridge.api.Wms.WmsSegment 0..* (Child link). child link to class WmsSegment  

Inherited Attributes: roottopObject

Attribute Methods (in class)

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Attribute Method Return Parameters Comment
accessControlOn
getAccessControlOn Boolean -
setAccessControlOn - Boolean
createdBy
getCreatedBy Word -
setCreatedBy - Word
currentGroupName
getCurrentGroupName Word -
setCurrentGroupName - Word
currentUserId
getCurrentUserId Word -
setCurrentUserId - Word
isLoaded
getIsLoaded Boolean -
isModifiable
getIsModifiable Boolean -
setIsModifiable - Boolean non-std.
isModified
getIsModified Boolean -
isReading
getIsReading Boolean -
lastUnlockedBy
getLastUnlockedBy Word -
setLastUnlockedBy - Word
name
getName Word -
setName - Word
override
getOverride Boolean -
setOverride - Boolean

Link Attribute Methods (in class)

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Attribute Method Return Parameters Comment
accessControlStores
getAccessControlStores memops.api.AccessControl.AccessControlStore Set -
sortedAccessControlStores memops.api.AccessControl.AccessControlStore List -
findFirstAccessControlStore memops.api.AccessControl.AccessControlStore keyword=value pairs
findAllAccessControlStores memops.api.AccessControl.AccessControlStore Set keyword=value pairs
activeRepositories
getActiveRepositories Repository Tuple -
findFirstActiveRepository Repository keyword=value pairs
findAllActiveRepositories Repository List keyword=value pairs
affiliationStores
getAffiliationStores ccp.api.general.Affiliation.AffiliationStore Set -
sortedAffiliationStores ccp.api.general.Affiliation.AffiliationStore List -
findFirstAffiliationStore ccp.api.general.Affiliation.AffiliationStore keyword=value pairs
findAllAffiliationStores ccp.api.general.Affiliation.AffiliationStore Set keyword=value pairs
analysisProfiles
getAnalysisProfiles ccpnmr.api.AnalysisProfile.AnalysisProfile Set -
sortedAnalysisProfiles ccpnmr.api.AnalysisProfile.AnalysisProfile List -
findFirstAnalysisProfile ccpnmr.api.AnalysisProfile.AnalysisProfile keyword=value pairs
findAllAnalysisProfiles ccpnmr.api.AnalysisProfile.AnalysisProfile Set keyword=value pairs
analysisProjectV3s
getAnalysisProjectV3s ccpnmr.api.AnalysisV3.AnalysisProjectV3 Set -
sortedAnalysisProjectV3s ccpnmr.api.AnalysisV3.AnalysisProjectV3 List -
findFirstAnalysisProjectV3 ccpnmr.api.AnalysisV3.AnalysisProjectV3 keyword=value pairs
findAllAnalysisProjectV3s ccpnmr.api.AnalysisV3.AnalysisProjectV3 Set keyword=value pairs
analysisProjects
getAnalysisProjects ccpnmr.api.Analysis.AnalysisProject Set -
sortedAnalysisProjects ccpnmr.api.Analysis.AnalysisProject List -
findFirstAnalysisProject ccpnmr.api.Analysis.AnalysisProject keyword=value pairs
findAllAnalysisProjects ccpnmr.api.Analysis.AnalysisProject Set keyword=value pairs
analysisWindowStores
getAnalysisWindowStores ccpnmr.api.AnalysisWindow.AnalysisWindowStore Set -
sortedAnalysisWindowStores ccpnmr.api.AnalysisWindow.AnalysisWindowStore List -
findFirstAnalysisWindowStore ccpnmr.api.AnalysisWindow.AnalysisWindowStore keyword=value pairs
findAllAnalysisWindowStores ccpnmr.api.AnalysisWindow.AnalysisWindowStore Set keyword=value pairs
annealProtocolStores
getAnnealProtocolStores molsim.api.AnnealProtocol.AnnealProtocolStore Set -
sortedAnnealProtocolStores molsim.api.AnnealProtocol.AnnealProtocolStore List -
findFirstAnnealProtocolStore molsim.api.AnnealProtocol.AnnealProtocolStore keyword=value pairs
findAllAnnealProtocolStores molsim.api.AnnealProtocol.AnnealProtocolStore Set keyword=value pairs
annotationStores
getAnnotationStores ccp.api.general.Annotation.AnnotationStore Set -
sortedAnnotationStores ccp.api.general.Annotation.AnnotationStore List -
findFirstAnnotationStore ccp.api.general.Annotation.AnnotationStore keyword=value pairs
findAllAnnotationStores ccp.api.general.Annotation.AnnotationStore Set keyword=value pairs
chemCompCharges
getChemCompCharges ccp.api.molecule.ChemCompCharge.ChemCompCharge Set -
sortedChemCompCharges ccp.api.molecule.ChemCompCharge.ChemCompCharge List -
findFirstChemCompCharge ccp.api.molecule.ChemCompCharge.ChemCompCharge keyword=value pairs
findAllChemCompCharges ccp.api.molecule.ChemCompCharge.ChemCompCharge Set keyword=value pairs
chemCompCoords
getChemCompCoords ccp.api.molecule.ChemCompCoord.ChemCompCoord Set -
sortedChemCompCoords ccp.api.molecule.ChemCompCoord.ChemCompCoord List -
findFirstChemCompCoord ccp.api.molecule.ChemCompCoord.ChemCompCoord keyword=value pairs
findAllChemCompCoords ccp.api.molecule.ChemCompCoord.ChemCompCoord Set keyword=value pairs
chemComps
getChemComps ccp.api.molecule.ChemComp.ChemComp Set -
sortedChemComps ccp.api.molecule.ChemComp.ChemComp List -
findFirstChemComp ccp.api.molecule.ChemComp.ChemComp keyword=value pairs
findAllChemComps ccp.api.molecule.ChemComp.ChemComp Set keyword=value pairs
chemElementStores
getChemElementStores ccp.api.molecule.ChemElement.ChemElementStore Set -
sortedChemElementStores ccp.api.molecule.ChemElement.ChemElementStore List -
findFirstChemElementStore ccp.api.molecule.ChemElement.ChemElementStore keyword=value pairs
findAllChemElementStores ccp.api.molecule.ChemElement.ChemElementStore Set keyword=value pairs
citationStores
getCitationStores ccp.api.general.Citation.CitationStore Set -
sortedCitationStores ccp.api.general.Citation.CitationStore List -
findFirstCitationStore ccp.api.general.Citation.CitationStore keyword=value pairs
findAllCitationStores ccp.api.general.Citation.CitationStore Set keyword=value pairs
classifications
getClassifications ccp.api.lims.Classification.Classification Set -
sortedClassifications ccp.api.lims.Classification.Classification List -
findFirstClassification ccp.api.lims.Classification.Classification keyword=value pairs
findAllClassifications ccp.api.lims.Classification.Classification Set keyword=value pairs
crystallizationStores
getCrystallizationStores ccp.api.lims.Crystallization.CrystallizationStore Set -
sortedCrystallizationStores ccp.api.lims.Crystallization.CrystallizationStore List -
findFirstCrystallizationStore ccp.api.lims.Crystallization.CrystallizationStore keyword=value pairs
findAllCrystallizationStores ccp.api.lims.Crystallization.CrystallizationStore Set keyword=value pairs
currentAccessControlStore
getCurrentAccessControlStore memops.api.AccessControl.AccessControlStore - non-std.
setCurrentAccessControlStore - memops.api.AccessControl.AccessControlStore
currentAffiliationStore
getCurrentAffiliationStore ccp.api.general.Affiliation.AffiliationStore - non-std.
setCurrentAffiliationStore - ccp.api.general.Affiliation.AffiliationStore
currentAnalysisProfile
getCurrentAnalysisProfile ccpnmr.api.AnalysisProfile.AnalysisProfile - non-std.
setCurrentAnalysisProfile - ccpnmr.api.AnalysisProfile.AnalysisProfile
currentAnalysisProject
getCurrentAnalysisProject ccpnmr.api.Analysis.AnalysisProject - non-std.
setCurrentAnalysisProject - ccpnmr.api.Analysis.AnalysisProject
currentAnalysisProjectV3
getCurrentAnalysisProjectV3 ccpnmr.api.AnalysisV3.AnalysisProjectV3 - non-std.
setCurrentAnalysisProjectV3 - ccpnmr.api.AnalysisV3.AnalysisProjectV3
currentAnalysisWindowStore
getCurrentAnalysisWindowStore ccpnmr.api.AnalysisWindow.AnalysisWindowStore - non-std.
setCurrentAnalysisWindowStore - ccpnmr.api.AnalysisWindow.AnalysisWindowStore
currentAnnealProtocolStore
getCurrentAnnealProtocolStore molsim.api.AnnealProtocol.AnnealProtocolStore - non-std.
setCurrentAnnealProtocolStore - molsim.api.AnnealProtocol.AnnealProtocolStore
currentAnnotationStore
getCurrentAnnotationStore ccp.api.general.Annotation.AnnotationStore - non-std.
setCurrentAnnotationStore - ccp.api.general.Annotation.AnnotationStore
currentChemComp
getCurrentChemComp ccp.api.molecule.ChemComp.ChemComp - non-std.
setCurrentChemComp - ccp.api.molecule.ChemComp.ChemComp
currentChemCompCharge
getCurrentChemCompCharge ccp.api.molecule.ChemCompCharge.ChemCompCharge - non-std.
setCurrentChemCompCharge - ccp.api.molecule.ChemCompCharge.ChemCompCharge
currentChemCompCoord
getCurrentChemCompCoord ccp.api.molecule.ChemCompCoord.ChemCompCoord - non-std.
setCurrentChemCompCoord - ccp.api.molecule.ChemCompCoord.ChemCompCoord
currentChemElementStore
getCurrentChemElementStore ccp.api.molecule.ChemElement.ChemElementStore - non-std.
setCurrentChemElementStore - ccp.api.molecule.ChemElement.ChemElementStore
currentCitationStore
getCurrentCitationStore ccp.api.general.Citation.CitationStore - non-std.
setCurrentCitationStore - ccp.api.general.Citation.CitationStore
currentClassification
getCurrentClassification ccp.api.lims.Classification.Classification - non-std.
setCurrentClassification - ccp.api.lims.Classification.Classification
currentCrystallizationStore
getCurrentCrystallizationStore ccp.api.lims.Crystallization.CrystallizationStore - non-std.
setCurrentCrystallizationStore - ccp.api.lims.Crystallization.CrystallizationStore
currentDangleStore
getCurrentDangleStore cambridge.api.Dangle.DangleStore - non-std.
setCurrentDangleStore - cambridge.api.Dangle.DangleStore
currentDataLocationStore
getCurrentDataLocationStore ccp.api.general.DataLocation.DataLocationStore - non-std.
setCurrentDataLocationStore - ccp.api.general.DataLocation.DataLocationStore
currentDatabase
getCurrentDatabase ccp.api.general.DbRef.Database - non-std.
setCurrentDatabase - ccp.api.general.DbRef.Database
currentExpBlueprintStore
getCurrentExpBlueprintStore ccp.api.lims.ExpBlueprint.ExpBlueprintStore - non-std.
setCurrentExpBlueprintStore - ccp.api.lims.ExpBlueprint.ExpBlueprintStore
currentExperimentStore
getCurrentExperimentStore ccp.api.lims.Experiment.ExperimentStore - non-std.
setCurrentExperimentStore - ccp.api.lims.Experiment.ExperimentStore
currentHaddockProject
getCurrentHaddockProject utrecht.api.Haddock.HaddockProject - non-std.
setCurrentHaddockProject - utrecht.api.Haddock.HaddockProject
currentHolderStore
getCurrentHolderStore ccp.api.lims.Holder.HolderStore - non-std.
setCurrentHolderStore - ccp.api.lims.Holder.HolderStore
currentInstrumentStore
getCurrentInstrumentStore ccp.api.general.Instrument.InstrumentStore - non-std.
setCurrentInstrumentStore - ccp.api.general.Instrument.InstrumentStore
currentKeywordDefinitionStore
getCurrentKeywordDefinitionStore ccp.api.general.KeywordDefinition.KeywordDefinitionStore - non-std.
setCurrentKeywordDefinitionStore - ccp.api.general.KeywordDefinition.KeywordDefinitionStore
currentLabeledMolecule
getCurrentLabeledMolecule ccp.api.molecule.LabeledMolecule.LabeledMolecule - non-std.
setCurrentLabeledMolecule - ccp.api.molecule.LabeledMolecule.LabeledMolecule
currentLabelingScheme
getCurrentLabelingScheme ccp.api.molecule.ChemCompLabel.LabelingScheme - non-std.
setCurrentLabelingScheme - ccp.api.molecule.ChemCompLabel.LabelingScheme
currentLayout
getCurrentLayout ccpnmr.api.AnalysisLayout.Layout - non-std.
setCurrentLayout - ccpnmr.api.AnalysisLayout.Layout
currentLocationStore
getCurrentLocationStore ccp.api.lims.Location.LocationStore - non-std.
setCurrentLocationStore - ccp.api.lims.Location.LocationStore
currentMethodStore
getCurrentMethodStore ccp.api.general.Method.MethodStore - non-std.
setCurrentMethodStore - ccp.api.general.Method.MethodStore
currentMolSystem
getCurrentMolSystem ccp.api.molecule.MolSystem.MolSystem - non-std.
setCurrentMolSystem - ccp.api.molecule.MolSystem.MolSystem
currentMolSystemSymmetrySet
getCurrentMolSystemSymmetrySet molsim.api.Symmetry.MolSystemSymmetrySet - non-std.
setCurrentMolSystemSymmetrySet - molsim.api.Symmetry.MolSystemSymmetrySet
currentMolecule
getCurrentMolecule ccp.api.molecule.Molecule.Molecule - non-std.
setCurrentMolecule - ccp.api.molecule.Molecule.Molecule
currentNameMappingStore
getCurrentNameMappingStore ccpnmr.api.NameMapping.NameMappingStore - non-std.
setCurrentNameMappingStore - ccpnmr.api.NameMapping.NameMappingStore
currentNmrCalcStore
getCurrentNmrCalcStore ccp.api.nmr.NmrCalc.NmrCalcStore - non-std.
setCurrentNmrCalcStore - ccp.api.nmr.NmrCalc.NmrCalcStore
currentNmrConstraintStore
getCurrentNmrConstraintStore ccp.api.nmr.NmrConstraint.NmrConstraintStore - non-std.
setCurrentNmrConstraintStore - ccp.api.nmr.NmrConstraint.NmrConstraintStore
currentNmrEntryStore
getCurrentNmrEntryStore ccp.api.nmr.NmrEntry.NmrEntryStore - non-std.
setCurrentNmrEntryStore - ccp.api.nmr.NmrEntry.NmrEntryStore
currentNmrExpPrototype
getCurrentNmrExpPrototype ccp.api.nmr.NmrExpPrototype.NmrExpPrototype - non-std.
setCurrentNmrExpPrototype - ccp.api.nmr.NmrExpPrototype.NmrExpPrototype
currentNmrProject
getCurrentNmrProject ccp.api.nmr.Nmr.NmrProject - non-std.
setCurrentNmrProject - ccp.api.nmr.Nmr.NmrProject
currentNmrReferenceStore
getCurrentNmrReferenceStore ccp.api.nmr.NmrReference.NmrReferenceStore - non-std.
setCurrentNmrReferenceStore - ccp.api.nmr.NmrReference.NmrReferenceStore
currentNmrScreen
getCurrentNmrScreen ccp.api.nmr.NmrScreen.NmrScreen - non-std.
setCurrentNmrScreen - ccp.api.nmr.NmrScreen.NmrScreen
currentProtocolStore
getCurrentProtocolStore ccp.api.lims.Protocol.ProtocolStore - non-std.
setCurrentProtocolStore - ccp.api.lims.Protocol.ProtocolStore
currentRefDataStore
getCurrentRefDataStore ccp.api.lims.RefData.RefDataStore - non-std.
setCurrentRefDataStore - ccp.api.lims.RefData.RefDataStore
currentRefSampleComponentStore
getCurrentRefSampleComponentStore ccp.api.lims.RefSampleComponent.RefSampleComponentStore - non-std.
setCurrentRefSampleComponentStore - ccp.api.lims.RefSampleComponent.RefSampleComponentStore
currentSampleStore
getCurrentSampleStore ccp.api.lims.Sample.SampleStore - non-std.
setCurrentSampleStore - ccp.api.lims.Sample.SampleStore
currentStereochemistryStore
getCurrentStereochemistryStore ccp.api.molecule.Stereochemistry.StereochemistryStore - non-std.
setCurrentStereochemistryStore - ccp.api.molecule.Stereochemistry.StereochemistryStore
currentStructureEnsemble
getCurrentStructureEnsemble ccp.api.molecule.MolStructure.StructureEnsemble - non-std.
setCurrentStructureEnsemble - ccp.api.molecule.MolStructure.StructureEnsemble
currentTargetStore
getCurrentTargetStore ccp.api.lims.Target.TargetStore - non-std.
setCurrentTargetStore - ccp.api.lims.Target.TargetStore
currentTaxonomy
getCurrentTaxonomy ccp.api.general.Taxonomy.Taxonomy - non-std.
setCurrentTaxonomy - ccp.api.general.Taxonomy.Taxonomy
currentValidationStore
getCurrentValidationStore ccp.api.molecule.Validation.ValidationStore - non-std.
setCurrentValidationStore - ccp.api.molecule.Validation.ValidationStore
currentWmsProtocol
getCurrentWmsProtocol cambridge.api.WmsProtocol.WmsProtocol - non-std.
setCurrentWmsProtocol - cambridge.api.WmsProtocol.WmsProtocol
currentWmsQueryStore
getCurrentWmsQueryStore cambridge.api.WmsQuery.WmsQueryStore - non-std.
setCurrentWmsQueryStore - cambridge.api.WmsQuery.WmsQueryStore
currentWmsSegment
getCurrentWmsSegment cambridge.api.Wms.WmsSegment - non-std.
setCurrentWmsSegment - cambridge.api.Wms.WmsSegment
dangleStores
getDangleStores cambridge.api.Dangle.DangleStore Set -
sortedDangleStores cambridge.api.Dangle.DangleStore List -
findFirstDangleStore cambridge.api.Dangle.DangleStore keyword=value pairs
findAllDangleStores cambridge.api.Dangle.DangleStore Set keyword=value pairs
dataLocationStores
getDataLocationStores ccp.api.general.DataLocation.DataLocationStore Set -
sortedDataLocationStores ccp.api.general.DataLocation.DataLocationStore List -
findFirstDataLocationStore ccp.api.general.DataLocation.DataLocationStore keyword=value pairs
findAllDataLocationStores ccp.api.general.DataLocation.DataLocationStore Set keyword=value pairs
databases
getDatabases ccp.api.general.DbRef.Database Set -
sortedDatabases ccp.api.general.DbRef.Database List -
findFirstDatabase ccp.api.general.DbRef.Database keyword=value pairs
findAllDatabases ccp.api.general.DbRef.Database Set keyword=value pairs
expBlueprintStores
getExpBlueprintStores ccp.api.lims.ExpBlueprint.ExpBlueprintStore Set -
sortedExpBlueprintStores ccp.api.lims.ExpBlueprint.ExpBlueprintStore List -
findFirstExpBlueprintStore ccp.api.lims.ExpBlueprint.ExpBlueprintStore keyword=value pairs
findAllExpBlueprintStores ccp.api.lims.ExpBlueprint.ExpBlueprintStore Set keyword=value pairs
experimentStores
getExperimentStores ccp.api.lims.Experiment.ExperimentStore Set -
sortedExperimentStores ccp.api.lims.Experiment.ExperimentStore List -
findFirstExperimentStore ccp.api.lims.Experiment.ExperimentStore keyword=value pairs
findAllExperimentStores ccp.api.lims.Experiment.ExperimentStore Set keyword=value pairs
haddockProjects
getHaddockProjects utrecht.api.Haddock.HaddockProject Set -
sortedHaddockProjects utrecht.api.Haddock.HaddockProject List -
findFirstHaddockProject utrecht.api.Haddock.HaddockProject keyword=value pairs
findAllHaddockProjects utrecht.api.Haddock.HaddockProject Set keyword=value pairs
holderStores
getHolderStores ccp.api.lims.Holder.HolderStore Set -
sortedHolderStores ccp.api.lims.Holder.HolderStore List -
findFirstHolderStore ccp.api.lims.Holder.HolderStore keyword=value pairs
findAllHolderStores ccp.api.lims.Holder.HolderStore Set keyword=value pairs
instrumentStores
getInstrumentStores ccp.api.general.Instrument.InstrumentStore Set -
sortedInstrumentStores ccp.api.general.Instrument.InstrumentStore List -
findFirstInstrumentStore ccp.api.general.Instrument.InstrumentStore keyword=value pairs
findAllInstrumentStores ccp.api.general.Instrument.InstrumentStore Set keyword=value pairs
keywordDefinitionStores
getKeywordDefinitionStores ccp.api.general.KeywordDefinition.KeywordDefinitionStore Set -
sortedKeywordDefinitionStores ccp.api.general.KeywordDefinition.KeywordDefinitionStore List -
findFirstKeywordDefinitionStore ccp.api.general.KeywordDefinition.KeywordDefinitionStore keyword=value pairs
findAllKeywordDefinitionStores ccp.api.general.KeywordDefinition.KeywordDefinitionStore Set keyword=value pairs
labeledMolecules
getLabeledMolecules ccp.api.molecule.LabeledMolecule.LabeledMolecule Set -
sortedLabeledMolecules ccp.api.molecule.LabeledMolecule.LabeledMolecule List -
findFirstLabeledMolecule ccp.api.molecule.LabeledMolecule.LabeledMolecule keyword=value pairs
findAllLabeledMolecules ccp.api.molecule.LabeledMolecule.LabeledMolecule Set keyword=value pairs
labelingSchemes
getLabelingSchemes ccp.api.molecule.ChemCompLabel.LabelingScheme Set -
sortedLabelingSchemes ccp.api.molecule.ChemCompLabel.LabelingScheme List -
findFirstLabelingScheme ccp.api.molecule.ChemCompLabel.LabelingScheme keyword=value pairs
findAllLabelingSchemes ccp.api.molecule.ChemCompLabel.LabelingScheme Set keyword=value pairs
layouts
getLayouts ccpnmr.api.AnalysisLayout.Layout Set -
sortedLayouts ccpnmr.api.AnalysisLayout.Layout List -
findFirstLayout ccpnmr.api.AnalysisLayout.Layout keyword=value pairs
findAllLayouts ccpnmr.api.AnalysisLayout.Layout Set keyword=value pairs
locationStores
getLocationStores ccp.api.lims.Location.LocationStore Set -
sortedLocationStores ccp.api.lims.Location.LocationStore List -
findFirstLocationStore ccp.api.lims.Location.LocationStore keyword=value pairs
findAllLocationStores ccp.api.lims.Location.LocationStore Set keyword=value pairs
methodStores
getMethodStores ccp.api.general.Method.MethodStore Set -
sortedMethodStores ccp.api.general.Method.MethodStore List -
findFirstMethodStore ccp.api.general.Method.MethodStore keyword=value pairs
findAllMethodStores ccp.api.general.Method.MethodStore Set keyword=value pairs
molSystemSymmetrySets
getMolSystemSymmetrySets molsim.api.Symmetry.MolSystemSymmetrySet Set -
sortedMolSystemSymmetrySets molsim.api.Symmetry.MolSystemSymmetrySet List -
findFirstMolSystemSymmetrySet molsim.api.Symmetry.MolSystemSymmetrySet keyword=value pairs
findAllMolSystemSymmetrySets molsim.api.Symmetry.MolSystemSymmetrySet Set keyword=value pairs
molSystems
getMolSystems ccp.api.molecule.MolSystem.MolSystem Set -
sortedMolSystems ccp.api.molecule.MolSystem.MolSystem List -
findFirstMolSystem ccp.api.molecule.MolSystem.MolSystem keyword=value pairs
findAllMolSystems ccp.api.molecule.MolSystem.MolSystem Set keyword=value pairs
molecules
getMolecules ccp.api.molecule.Molecule.Molecule Set -
sortedMolecules ccp.api.molecule.Molecule.Molecule List -
findFirstMolecule ccp.api.molecule.Molecule.Molecule keyword=value pairs
findAllMolecules ccp.api.molecule.Molecule.Molecule Set keyword=value pairs
nameMappingStores
getNameMappingStores ccpnmr.api.NameMapping.NameMappingStore Set -
sortedNameMappingStores ccpnmr.api.NameMapping.NameMappingStore List -
findFirstNameMappingStore ccpnmr.api.NameMapping.NameMappingStore keyword=value pairs
findAllNameMappingStores ccpnmr.api.NameMapping.NameMappingStore Set keyword=value pairs
nmrCalcStores
getNmrCalcStores ccp.api.nmr.NmrCalc.NmrCalcStore Set -
sortedNmrCalcStores ccp.api.nmr.NmrCalc.NmrCalcStore List -
findFirstNmrCalcStore ccp.api.nmr.NmrCalc.NmrCalcStore keyword=value pairs
findAllNmrCalcStores ccp.api.nmr.NmrCalc.NmrCalcStore Set keyword=value pairs
nmrConstraintStores
getNmrConstraintStores ccp.api.nmr.NmrConstraint.NmrConstraintStore Set -
sortedNmrConstraintStores ccp.api.nmr.NmrConstraint.NmrConstraintStore List -
findFirstNmrConstraintStore ccp.api.nmr.NmrConstraint.NmrConstraintStore keyword=value pairs
findAllNmrConstraintStores ccp.api.nmr.NmrConstraint.NmrConstraintStore Set keyword=value pairs
nmrEntryStores
getNmrEntryStores ccp.api.nmr.NmrEntry.NmrEntryStore Set -
sortedNmrEntryStores ccp.api.nmr.NmrEntry.NmrEntryStore List -
findFirstNmrEntryStore ccp.api.nmr.NmrEntry.NmrEntryStore keyword=value pairs
findAllNmrEntryStores ccp.api.nmr.NmrEntry.NmrEntryStore Set keyword=value pairs
nmrExpPrototypes
getNmrExpPrototypes ccp.api.nmr.NmrExpPrototype.NmrExpPrototype Set -
sortedNmrExpPrototypes ccp.api.nmr.NmrExpPrototype.NmrExpPrototype List -
findFirstNmrExpPrototype ccp.api.nmr.NmrExpPrototype.NmrExpPrototype keyword=value pairs
findAllNmrExpPrototypes ccp.api.nmr.NmrExpPrototype.NmrExpPrototype Set keyword=value pairs
nmrProjects
getNmrProjects ccp.api.nmr.Nmr.NmrProject Set -
sortedNmrProjects ccp.api.nmr.Nmr.NmrProject List -
findFirstNmrProject ccp.api.nmr.Nmr.NmrProject keyword=value pairs
findAllNmrProjects ccp.api.nmr.Nmr.NmrProject Set keyword=value pairs
nmrReferenceStores
getNmrReferenceStores ccp.api.nmr.NmrReference.NmrReferenceStore Set -
sortedNmrReferenceStores ccp.api.nmr.NmrReference.NmrReferenceStore List -
findFirstNmrReferenceStore ccp.api.nmr.NmrReference.NmrReferenceStore keyword=value pairs
findAllNmrReferenceStores ccp.api.nmr.NmrReference.NmrReferenceStore Set keyword=value pairs
nmrScreens
getNmrScreens ccp.api.nmr.NmrScreen.NmrScreen Set -
sortedNmrScreens ccp.api.nmr.NmrScreen.NmrScreen List -
findFirstNmrScreen ccp.api.nmr.NmrScreen.NmrScreen keyword=value pairs
findAllNmrScreens ccp.api.nmr.NmrScreen.NmrScreen Set keyword=value pairs
packageLocator
getPackageLocator PackageLocator - non-std.
packageLocators
getPackageLocators PackageLocator Set -
sortedPackageLocators PackageLocator List -
findFirstPackageLocator PackageLocator keyword=value pairs
findAllPackageLocators PackageLocator Set keyword=value pairs
parent
getParent MemopsRoot -
protocolStores
getProtocolStores ccp.api.lims.Protocol.ProtocolStore Set -
sortedProtocolStores ccp.api.lims.Protocol.ProtocolStore List -
findFirstProtocolStore ccp.api.lims.Protocol.ProtocolStore keyword=value pairs
findAllProtocolStores ccp.api.lims.Protocol.ProtocolStore Set keyword=value pairs
refDataStores
getRefDataStores ccp.api.lims.RefData.RefDataStore Set -
sortedRefDataStores ccp.api.lims.RefData.RefDataStore List -
findFirstRefDataStore ccp.api.lims.RefData.RefDataStore keyword=value pairs
findAllRefDataStores ccp.api.lims.RefData.RefDataStore Set keyword=value pairs
refSampleComponentStores
getRefSampleComponentStores ccp.api.lims.RefSampleComponent.RefSampleComponentStore Set -
sortedRefSampleComponentStores ccp.api.lims.RefSampleComponent.RefSampleComponentStore List -
findFirstRefSampleComponentStore ccp.api.lims.RefSampleComponent.RefSampleComponentStore keyword=value pairs
findAllRefSampleComponentStores ccp.api.lims.RefSampleComponent.RefSampleComponentStore Set keyword=value pairs
repositories
getRepositories Repository Set -
sortedRepositories Repository List -
findFirstRepository Repository keyword=value pairs
findAllRepositories Repository Set keyword=value pairs
sampleStores
getSampleStores ccp.api.lims.Sample.SampleStore Set -
sortedSampleStores ccp.api.lims.Sample.SampleStore List -
findFirstSampleStore ccp.api.lims.Sample.SampleStore keyword=value pairs
findAllSampleStores ccp.api.lims.Sample.SampleStore Set keyword=value pairs
stereochemistryStores
getStereochemistryStores ccp.api.molecule.Stereochemistry.StereochemistryStore Set -
sortedStereochemistryStores ccp.api.molecule.Stereochemistry.StereochemistryStore List -
findFirstStereochemistryStore ccp.api.molecule.Stereochemistry.StereochemistryStore keyword=value pairs
findAllStereochemistryStores ccp.api.molecule.Stereochemistry.StereochemistryStore Set keyword=value pairs
structureEnsembles
getStructureEnsembles ccp.api.molecule.MolStructure.StructureEnsemble Set -
sortedStructureEnsembles ccp.api.molecule.MolStructure.StructureEnsemble List -
findFirstStructureEnsemble ccp.api.molecule.MolStructure.StructureEnsemble keyword=value pairs
findAllStructureEnsembles ccp.api.molecule.MolStructure.StructureEnsemble Set keyword=value pairs
targetStores
getTargetStores ccp.api.lims.Target.TargetStore Set -
sortedTargetStores ccp.api.lims.Target.TargetStore List -
findFirstTargetStore ccp.api.lims.Target.TargetStore keyword=value pairs
findAllTargetStores ccp.api.lims.Target.TargetStore Set keyword=value pairs
taxonomies
getTaxonomies ccp.api.general.Taxonomy.Taxonomy Set -
sortedTaxonomies ccp.api.general.Taxonomy.Taxonomy List -
findFirstTaxonomy ccp.api.general.Taxonomy.Taxonomy keyword=value pairs
findAllTaxonomies ccp.api.general.Taxonomy.Taxonomy Set keyword=value pairs
topObjects
getTopObjects TopObject Set -
sortedTopObjects TopObject List -
findFirstTopObject TopObject keyword=value pairs
findAllTopObjects TopObject Set keyword=value pairs
validationStores
getValidationStores ccp.api.molecule.Validation.ValidationStore Set -
sortedValidationStores ccp.api.molecule.Validation.ValidationStore List -
findFirstValidationStore ccp.api.molecule.Validation.ValidationStore keyword=value pairs
findAllValidationStores ccp.api.molecule.Validation.ValidationStore Set keyword=value pairs
wmsProtocols
getWmsProtocols cambridge.api.WmsProtocol.WmsProtocol Set -
sortedWmsProtocols cambridge.api.WmsProtocol.WmsProtocol List -
findFirstWmsProtocol cambridge.api.WmsProtocol.WmsProtocol keyword=value pairs
findAllWmsProtocols cambridge.api.WmsProtocol.WmsProtocol Set keyword=value pairs
wmsQueryStores
getWmsQueryStores cambridge.api.WmsQuery.WmsQueryStore Set -
sortedWmsQueryStores cambridge.api.WmsQuery.WmsQueryStore List -
findFirstWmsQueryStore cambridge.api.WmsQuery.WmsQueryStore keyword=value pairs
findAllWmsQueryStores cambridge.api.WmsQuery.WmsQueryStore Set keyword=value pairs
wmsSegments
getWmsSegments cambridge.api.Wms.WmsSegment Set -
sortedWmsSegments cambridge.api.Wms.WmsSegment List -
findFirstWmsSegment cambridge.api.Wms.WmsSegment keyword=value pairs
findAllWmsSegments cambridge.api.Wms.WmsSegment Set keyword=value pairs

Class Methods (in class)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in class)

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Method Return Parameters
newAccessControlStore memops.api.AccessControl.AccessControlStore name, ...
newAffiliationStore ccp.api.general.Affiliation.AffiliationStore name, ...
newAnalysisProfile ccpnmr.api.AnalysisProfile.AnalysisProfile name, ...
newAnalysisProject ccpnmr.api.Analysis.AnalysisProject name, nmrProject, ...
newAnalysisProjectV3 ccpnmr.api.AnalysisV3.AnalysisProjectV3 name, nmrProject, ...
newAnalysisWindowStore ccpnmr.api.AnalysisWindow.AnalysisWindowStore name, ...
newAnnealProtocolStore molsim.api.AnnealProtocol.AnnealProtocolStore name, ...
newAnnotationStore ccp.api.general.Annotation.AnnotationStore name, ...
newChemCompCharge ccp.api.molecule.ChemCompCharge.ChemCompCharge ccpCode, molType, sourceName, ...
newChemCompCoord ccp.api.molecule.ChemCompCoord.ChemCompCoord ccpCode, molType, sourceName, ...
newChemElementStore ccp.api.molecule.ChemElement.ChemElementStore name, ...
newCitationStore ccp.api.general.Citation.CitationStore name, ...
newClassification ccp.api.lims.Classification.Classification namingSystem, ...
newCrystallizationStore ccp.api.lims.Crystallization.CrystallizationStore name, ...
newDangleStore cambridge.api.Dangle.DangleStore name, ...
newDataLocationStore ccp.api.general.DataLocation.DataLocationStore name, ...
newDatabase ccp.api.general.DbRef.Database name, ...
newExpBlueprintStore ccp.api.lims.ExpBlueprint.ExpBlueprintStore name, ...
newExperimentStore ccp.api.lims.Experiment.ExperimentStore name, ...
newHaddockProject utrecht.api.Haddock.HaddockProject name, workingDir, ...
newHolderStore ccp.api.lims.Holder.HolderStore name, ...
newInstrumentStore ccp.api.general.Instrument.InstrumentStore name, ...
newKeywordDefinitionStore ccp.api.general.KeywordDefinition.KeywordDefinitionStore context, ...
newLabeledMolecule ccp.api.molecule.LabeledMolecule.LabeledMolecule name, ...
newLabelingScheme ccp.api.molecule.ChemCompLabel.LabelingScheme name, ...
newLayout ccpnmr.api.AnalysisLayout.Layout name, ...
newLocationStore ccp.api.lims.Location.LocationStore name, ...
newMethodStore ccp.api.general.Method.MethodStore name, ...
newMolSystem ccp.api.molecule.MolSystem.MolSystem code, ...
newMolSystemSymmetrySet molsim.api.Symmetry.MolSystemSymmetrySet symmetrySetId, molSystem, ...
newMolecule ccp.api.molecule.Molecule.Molecule name, ...
newNameMappingStore ccpnmr.api.NameMapping.NameMappingStore name, ...
newNmrCalcStore ccp.api.nmr.NmrCalc.NmrCalcStore name, nmrProjectName, ...
newNmrConstraintStore ccp.api.nmr.NmrConstraint.NmrConstraintStore nmrProject, ...
newNmrEntryStore ccp.api.nmr.NmrEntry.NmrEntryStore name, ...
newNmrExpPrototype ccp.api.nmr.NmrExpPrototype.NmrExpPrototype category, name, ...
newNmrProject ccp.api.nmr.Nmr.NmrProject name, ...
newNmrReferenceStore ccp.api.nmr.NmrReference.NmrReferenceStore ccpCode, molType, ...
newNmrScreen ccp.api.nmr.NmrScreen.NmrScreen code, ...
newNonStdChemComp ccp.api.molecule.ChemComp.NonStdChemComp ...
newPackageLocator PackageLocator repositories
newProtocolStore ccp.api.lims.Protocol.ProtocolStore name, ...
newRefDataStore ccp.api.lims.RefData.RefDataStore refSampleComponentStore, ...
newRefSampleComponentStore ccp.api.lims.RefSampleComponent.RefSampleComponentStore name, ...
newRepository Repository name, url, ...
newSampleStore ccp.api.lims.Sample.SampleStore name, ...
newStdChemComp ccp.api.molecule.ChemComp.StdChemComp code1Letter, stdChemCompCode, ...
newStereochemistryStore ccp.api.molecule.Stereochemistry.StereochemistryStore name, ...
newStructureEnsemble ccp.api.molecule.MolStructure.StructureEnsemble ensembleId, molSystem, ...
newTargetStore ccp.api.lims.Target.TargetStore name, ...
newTaxonomy ccp.api.general.Taxonomy.Taxonomy name, ...
newValidationStore ccp.api.molecule.Validation.ValidationStore name, software, ...
newWmsProtocol cambridge.api.WmsProtocol.WmsProtocol name, ...
newWmsQueryStore cambridge.api.WmsQuery.WmsQueryStore ...
newWmsSegment cambridge.api.Wms.WmsSegment name, ...

Other Methods (in class)

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Method Return Parameters Comment
backup - - non-std. back up TopObject to current backup location
backupAll - - non-std. back up memopsRoot and all known top objects
importData TopObject PathString non-std. Load data from file, without triggering any other loads. If the guid or code of the file TopObject are already in memory you will get an error. The loaded file will be saved in the first repository on the search path, overriding anything that might be there already
newGuid Line - non-std. get new globally unique identifier
refreshTopObjects - Word non-std. Check on disk to make sure all topObjects in package packageName are present.
removeFrom - Repository non-std. Remove data from specified repository. Will remove from disk. NB This operation is marked as a query because this means it may be executed on a deleted object. It does have the lasting side effect of changing the contents of the repository.
save - - non-std. Save data corresponding to TopObject
saveAll - - non-std. force save of all data
saveModified - - non-std. Save all modified data
saveTo - Repository non-std. Save topObject to specified repository
touch - - non-std. Set storage.isModified to True, so that the storage is saved at the next saveModified command. Fails if the storage is not loaded or not modifiable.

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:53_00047

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraint name:

must_have_default_packageLocator
Constraint code: self.findFirstPackageLocator(targetName='any') is not None
Known inward one-way links: memops.api.Implementation.ImplementationObject.topObjectmemops.api.Implementation.MemopsObject.rootmemops.api.Implementation.TopObject.memopsRoot
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Thu Oct 2 16:09:00 2014    from data model package  memops.api.Implementation.MemopsRoot   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk