Data Model version 2.1.2
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Class: MolFeature


    The feature is an annotation on a residue. The feature is a modification, a mutation,... made in comparison to the wild type sequence, or a simple comment for a particular residue.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link annotationStore to class AnnotationStore
Main key: serial
Mandatory Attributes: featureType, molResidue
Known Subclasses: None
Children: None
Constructor: newObj = MolFeature( annotationStore,featureType=value, molResidue=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
details String 0..1 Detail field for comments.  
featureType Word 1..1 The type of the feature. e.g. 'Selenomethionated', 'Oxidised', 'Reduced', 'Phosphorylated', 'Methylated', 'Glycosylated', 'Ubiquitinated', 'Hydroxyprolinated', 'Gammacarboxybutylated', 'Myristolated', 'Sulfonated'.  
position Int 1..1 Derived. Position of the feature in sequence.  
serial Int 1..1 Unique identifier.  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
annotationStore AnnotationStore 1..1 (Parent link). parent link  
molResidue ccp.api.molecule.Molecule.MolResidue 1..1 The MolResidue who has the different features.  
parent AnnotationStore 1..1 link to parent object - synonym for annotationStore  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
details
getDetails String -
setDetails - String
featureType
getFeatureType Word -
setFeatureType - Word
position
getPosition Int - non-std.
serial
getSerial Int -
setSerial - Int

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
annotationStore
getAnnotationStore AnnotationStore -
molResidue
getMolResidue ccp.api.molecule.Molecule.MolResidue -
setMolResidue - ccp.api.molecule.Molecule.MolResidue
parent
getParent AnnotationStore -

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey MolFeature memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:25:09_00025

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Thu Oct 2 16:09:50 2014    from data model package  ccp.api.general.Annotation.MolFeature   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk