Data Model version 2.1.2
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Class: ChainFragment


    Fragment of Chain with defined MolType for all residues. ChainFragments are generated automatically by the Chain initialiser function. See documentation of Chain.createChainFragments for a description of the normal way of dividing a Chain in ChainFragments.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link chain to class Chain
Main key: serial
Mandatory Attributes: isLinearPolymer, molType
Known Subclasses: None
Children: None
Constructor: newObj = ChainFragment( chain,isLinearPolymer=value, molType=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
isLinearPolymer Boolean 1..1 Is ChainFragment a linear polymer? Implies that each residue, in the order given in the residues link, is linked to the next one by a link of linear polymer type (linkEnds 'next','prev').  
molType Word 1..1 molType of residues in ChainFragment. Must apply to all residues  
serial Int 1..1 Serial number of object. Serves as object main key. Serial numbers of deleted objects are not re-used. Serial numbers can only be set by the implementation. Values are in practice always positive, since negative values are interpreted as a signal to set the next free serial  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
chain Chain 1..1 (Parent link). parent link  
parent Chain 1..1 link to parent object - synonym for chain  
residues Residue 0..* residues making up ChainFragment  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
isLinearPolymer
getIsLinearPolymer Boolean -
setIsLinearPolymer - Boolean
molType
getMolType Word -
setMolType - Word
serial
getSerial Int -
setSerial - Int

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
chain
getChain Chain -
parent
getParent Chain -
residues
getResidues Residue Tuple -
setResidues - Residue List
findFirstResidue Residue keyword=value pairs
findAllResidues Residue List keyword=value pairs

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey ChainFragment memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:54_00036

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Thu Oct 2 16:09:24 2014    from data model package  ccp.api.molecule.MolSystem.ChainFragment   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk