Data Model version 2.1.2
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Class: HaddockPartner


    Haddock interacting unit (may be one or more CCPN chains)
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link haddockProject to class HaddockProject
Main key: code
Mandatory Attributes: code, molSystem
Known Subclasses: None
Children:
link chains to class Chain
Constructor: newObj = HaddockPartner( haddockProject,code=value, molSystem=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
airUpperDistanceLimit NonNegativeFloat 1..1 Sets the upper distance cutoff for Ambiguous Interaction  
autoHistidinePstate Boolean 1..1 auto_his - automatically determine histidine protonation state.  
code Word 1..1 Haddock ChainCode  
fileNames PathString 0..* Names of files containing ensemble structures. NB Classic case only. Obsolescent.  
forceFieldCode ForceFieldCode 1..1 Code for force field usedfor HaddockPartner  
isDna Boolean 1..1  
semiFlexMode SemiFlexMode 1..1 Either set the semi-flexible residues manually or have them defined automatically by Haddock (all residues within 5.0 A of the partner molecule).  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
chains Chain 0..* (Child link). child link to class Chain  
haddockProject HaddockProject 1..1 (Parent link). parent link  
molSystem ccp.api.molecule.MolSystem.MolSystem 1..1 MolSystem that HaddockPartner belongs to  
parent HaddockProject 1..1 link to parent object - synonym for haddockProject  
structureEnsemble ccp.api.molecule.MolStructure.StructureEnsemble 0..1 StructureEnsemble used for Haddock simulations for partner  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
airUpperDistanceLimit
getAirUpperDistanceLimit NonNegativeFloat -
setAirUpperDistanceLimit - NonNegativeFloat
autoHistidinePstate
getAutoHistidinePstate Boolean -
setAutoHistidinePstate - Boolean
code
getCode Word -
setCode - Word
fileNames
getFileNames PathString Tuple -
setFileNames - PathString List
addFileName - PathString
removeFileName - PathString
forceFieldCode
getForceFieldCode ForceFieldCode -
setForceFieldCode - ForceFieldCode
isDna
getIsDna Boolean -
setIsDna - Boolean
semiFlexMode
getSemiFlexMode SemiFlexMode -
setSemiFlexMode - SemiFlexMode

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
chains
getChains Chain Set -
sortedChains Chain List -
findFirstChain Chain keyword=value pairs
findAllChains Chain Set keyword=value pairs
haddockProject
getHaddockProject HaddockProject -
molSystem
getMolSystem ccp.api.molecule.MolSystem.MolSystem -
setMolSystem - ccp.api.molecule.MolSystem.MolSystem
parent
getParent HaddockProject -
structureEnsemble
getStructureEnsemble ccp.api.molecule.MolStructure.StructureEnsemble -
setStructureEnsemble - ccp.api.molecule.MolStructure.StructureEnsemble

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey HaddockPartner memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
newChain Chain chain, ...

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-10-11-22:58:43_00004

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Thu Oct 2 16:09:51 2014    from data model package  utrecht.api.Haddock.HaddockPartner   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk