Data Model version 2.1.2
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Class: MolCompFeature


    The MolCompFeature is used to assign information to each part of the MolComponent sequence, as defined by a series of MolResidues with consecutive serials.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link molComponent to class MolComponent
Main key: serial
Mandatory Attributes: featureType, name
Known Subclasses: None
Children: None
Constructor: newObj = MolCompFeature( molComponent,featureType=value, name=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
details String 0..1 Detail field for comments.  
endSeqId Int 0..1 Residue number (MolResidue.serial) of the end sequence in the MolComponent.  
featureType FeatureType 1..1 The type of the feature e.g. 'tag', 'cleavage site', 'promoter', 'resistance', 'marker', 'product',...  
length Int 0..1 Derived. The sequence length of the feature.  
name Line 1..1 The name of the feature.  
ordering Int 0..1 Integer defining the ordering of MolCompFeatures. For when startSeqId and endSeqId are not known.  
serial Int 1..1 Serial number of object. Serves as object main key. Serial numbers of deleted objects are not re-used. Serial numbers can only be set by the implementation. Values are in practice always positive, since negative values are interpreted as a signal to set the next free serial  
startSeqId Int 0..1 Residue number (MolResidue.serial) of the start sequence in the MolComponent.  
status StatusType 0..1 The status of the feature e.g. cut, uncut,...  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
molComponent MolComponent 1..1 (Parent link). parent link  
parent MolComponent 1..1 link to parent object - synonym for molComponent  
refMolComponent MolComponent 0..1  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
details
getDetails String -
setDetails - String
endSeqId
getEndSeqId Int -
setEndSeqId - Int
featureType
getFeatureType FeatureType -
setFeatureType - FeatureType
length
getLength Int - non-std.
name
getName Line -
setName - Line
ordering
getOrdering Int -
setOrdering - Int
serial
getSerial Int -
setSerial - Int
startSeqId
getStartSeqId Int -
setStartSeqId - Int
status
getStatus StatusType -
setStatus - StatusType

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
molComponent
getMolComponent MolComponent -
parent
getParent MolComponent -
refMolComponent
getRefMolComponent MolComponent -
setRefMolComponent - MolComponent

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey MolCompFeature memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:53_00005

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Thu Oct 2 16:09:26 2014    from data model package  ccp.api.lims.RefSampleComponent.MolCompFeature   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk