Data Model version 2.1.2
Acknowledgements
Diagram | Class Map | Attribute Map | Method Map | Help | License
Home | Package | Class: { prev | next } | Attribute | Method

Class: ChemAtomCoord


    Default coordinates for ChemAtom in ChemCompVar
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link chemCompCoord to class ChemCompCoord
Main key: serial
Mandatory Attributes: name
Known Subclasses: None
Children: None
Constructor: newObj = ChemAtomCoord( chemCompCoord,name=value, ... )

Attributes (in package)

Go to Top
Attribute Type Multiplicity Description
name Word 1..1 Name of ChemAtom to which coordinates belong  
serial Int 1..1 Serial number of object. Serves as object main key. Serial numbers of deleted objects are not re-used. Serial numbers can only be set by the implementation. Values are in practice always positive, since negative values are interpreted as a signal to set the next free serial  
subType Int 1..1 SubType of ChemAtom to which coordinates belong  
x Float 0..1 X coordinate in Angstroms  
y Float 0..1 Y coordinate in Angstroms  
z Float 0..1 Z coordinate in Angstroms  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

Go to Top
Attribute Type Multiplicity Description
chemAtom ccp.api.molecule.ChemComp.AbstractChemAtom 1..1 Derived. ChemAtom or LinkAtom to which coordinates belong, for a given ChemComp  
chemCompCoord ChemCompCoord 1..1 (Parent link). parent link  
chemCompVarCoords ChemCompVarCoord 0..* ChemCompVarCoords where ChemAtomCoord is involved. NBNB TBD - cardinality should be 1..*. Current value is temporary, pending a rewrite of the ChemCompCoords.  
parent ChemCompCoord 1..1 link to parent object - synonym for chemCompCoord  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

Go to Top
Attribute Method Return Parameters Comment
name
getName Word -
setName - Word
serial
getSerial Int -
setSerial - Int
subType
getSubType Int -
setSubType - Int
x
getX Float -
setX - Float
y
getY Float -
setY - Float
z
getZ Float -
setZ - Float

Link Attribute Methods (in package)

Go to Top
Attribute Method Return Parameters Comment
chemAtom
getChemAtom ccp.api.molecule.ChemComp.AbstractChemAtom - non-std.
chemCompCoord
getChemCompCoord ChemCompCoord -
chemCompVarCoords
getChemCompVarCoords ChemCompVarCoord Set -
setChemCompVarCoords - ChemCompVarCoord Set
sortedChemCompVarCoords ChemCompVarCoord List -
addChemCompVarCoord - ChemCompVarCoord
removeChemCompVarCoord - ChemCompVarCoord
findFirstChemCompVarCoord ChemCompVarCoord keyword=value pairs
findAllChemCompVarCoords ChemCompVarCoord Set keyword=value pairs
parent
getParent ChemCompCoord -

Class Methods (in package)

Go to Top
Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey ChemAtomCoord memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

Go to Top
Method Return Parameters
None

Other Methods (in package)

Go to Top
Method Return Parameters Comment
None

Appendix

Go to Top

guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:55_00009

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
Go to Top  
  Autogenerated by  PyApiDocGen  revision 1.3   on  Thu Oct 2 16:09:17 2014    from data model package  ccp.api.molecule.ChemCompCoord.ChemAtomCoord   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk