Go to the documentation of this file. 1 #ifndef VIENNA_RNA_PACKAGE_CENTROID_H
2 #define VIENNA_RNA_PACKAGE_CENTROID_H
8 #ifdef VRNA_WARN_DEPRECATED
9 # if defined(__clang__)
10 # define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
11 # elif defined(__GNUC__)
12 # define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
14 # define DEPRECATED(func, msg) func
17 # define DEPRECATED(func, msg) func
88 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
98 "Use vrna_centroid_from_plist() instead");
108 "Use vrna_centroid_from_probs() instead");
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structures.h:453
char * vrna_centroid_from_probs(int length, double *dist, FLT_OR_DBL *probs)
Get the centroid structure of the ensemble.
char * vrna_centroid(vrna_fold_compound_t *vc, double *dist)
Get the centroid structure of the ensemble.
char * vrna_centroid_from_plist(int length, double *dist, vrna_ep_t *pl)
Get the centroid structure of the ensemble.
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: basic.h:43
char * get_centroid_struct_pr(int length, double *dist, FLT_OR_DBL *pr)
Get the centroid structure of the ensemble.
Various data structures and pre-processor macros.
char * get_centroid_struct_pl(int length, double *dist, vrna_ep_t *pl)
Get the centroid structure of the ensemble.
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:137
The Basic Fold Compound API.
Various utility- and helper-functions for secondary structure parsing, converting,...