RNAlib-2.4.17
plex.h
1 #ifndef VIENNA_RNA_PACKAGE_PLEX_H
2 #define VIENNA_RNA_PACKAGE_PLEX_H
3 
5 
6 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
7 
8 extern int subopt_sorted;
9 
13 duplexT** Lduplexfold(const char *s1,
14  const char *s2,
15  const int threshold,
16  const int extension_cost,
17  const int alignment_length,
18  const int delta,
19  const int fast,
20  const int il_a,
21  const int il_b,
22  const int b_a,
23  const int b_b);
24 
28 duplexT** Lduplexfold_XS( const char*s1,
29  const char* s2,
30  const int **access_s1,
31  const int **access_s2,
32  const int threshold,
33  const int delta,
34  const int alignment_length,
35  const int fast,
36  const int il_a,
37  const int il_b,
38  const int b_a,
39  const int b_b);/* , const int target_dead, const int query_dead); */
40 
44 duplexT** Lduplexfold_C(const char *s1,
45  const char *s2,
46  const int threshold,
47  const int extension_cost,
48  const int alignment_length,
49  const int delta,
50  const int fast,
51  const char* structure,
52  const int il_a,
53  const int il_b,
54  const int b_a,
55  const int b_b);
56 
61 duplexT** Lduplexfold_CXS(const char*s1,
62  const char* s2,
63  const int **access_s1,
64  const int **access_s2,
65  const int threshold,
66  const int delta,
67  const int alignment_length,
68  const int fast,
69  const char* structure,
70  const int il_a,
71  const int il_b,
72  const int b_a,
73  const int b_b); /*, const int target_dead, const int query_dead); */
74 
75 
76 
77 
78 int arraySize(duplexT** array);
79 void freeDuplexT(duplexT** array);
80 
81 #endif
82 
83 #endif
subopt_sorted
int subopt_sorted
Sort output by energy.
basic.h
Various data structures and pre-processor macros.
duplexT
Data structure for RNAduplex.
Definition: basic.h:211