Last updated on 2024-06-11 16:49:47 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| NADIA | 1 | 9 | 3 |
Current CRAN status: ERROR: 1, NOTE: 9, OK: 3
Version: 0.4.2
Check: Rd files
Result: NOTE
checkRd: (-1) PipeOpMice.Rd:33: Lost braces; missing escapes or markup?
33 | set of methods to chose. Avalible methods {"pmm", "midastouch", "sample", "cart", "rf"} Default 'pmm'. If seted on NULL this methods are used predictive mean matching (numeric data) logreg, logistic regression imputation (binary data, factor with 2 levels) polyreg, polytomous regression imputation for unordered categorical data (factor > 2 levels) polr, proportional odds model for (ordered, > 2 levels).
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.4.2
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘glmnet’ ‘mlr3learners’ ‘rpart’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.4.2
Check: examples
Result: ERROR
Running examples in ‘NADIA-Ex.R’ failed
The error most likely occurred in:
> ### Name: PipeOpOOR_B
> ### Title: PipeOpOOR_B
> ### Aliases: PipeOpOOR_B
>
> ### ** Examples
>
> {
+
+ # Using debug learner for example purpose
+
+ graph <- PipeOpOOR_B$new() %>>% LearnerClassifDebug$new()
+ graph_learner <- GraphLearner$new(graph)
+
+ # Task with NA
+ set.seed(1)
+ resample(tsk("pima"), graph_learner, rsmp("cv", folds = 3))
+ }
Error in initialize(...) : object 'ParamLgl' not found
Calls: %>>% ... .__ParamSet__initialize -> assert_list -> checkList -> %and% -> isTRUE
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.4.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [28s/61s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NADIA)
Loading required package: mlr3
Loading required package: mlr3pipelines
Loading required package: paradox
>
> test_check("NADIA")
[1] "Error in doTryCatch(return(expr), name, parentenv, handler): No values with no missing values\n"
[ FAIL 5 | WARN 0 | SKIP 12 | PASS 47 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test_A.R:7:3', 'test_A.R:41:3', 'test_autotune.R:287:3',
'test_autotune.R:303:3', 'test_autotune.R:308:3', 'test_autotune.R:313:3',
'test_autotune.R:318:3', 'test_autotune.R:323:3', 'test_autotune.R:332:3',
'test_autotune.R:345:3', 'test_autotune.R:350:3', 'test_simplePipe.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_advancePipeline.R:7:3'): Creting PipeLines ─────────────────────
Error in `initialize(...)`: object 'ParamUty' not found
Backtrace:
▆
1. ├─testthat::expect_is(PipeOpAmelia$new(), "PipeOpImpute") at test_advancePipeline.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─PipeOpAmelia$new()
5. └─NADIA (local) initialize(...)
6. ├─super$initialize(...)
7. │ └─mlr3pipelines:::.__PipeOpImpute__initialize(...)
8. └─ParamSet$new(...)
9. └─paradox (local) initialize(...)
10. └─paradox:::.__ParamSet__initialize(...)
11. └─checkmate::assert_list(params, types = "Domain")
12. └─checkmate::checkList(...)
13. └─... %and% checkListTypes(x, types)
14. └─base::isTRUE(lhs)
── Error ('test_advancePipeline.R:62:3'): Adavance pipe simple imputation ─────
Error in `initialize(...)`: object 'ParamUty' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test_advancePipeline.R:62:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─PipeOpAmelia$new()
5. └─NADIA (local) initialize(...)
6. ├─super$initialize(...)
7. │ └─mlr3pipelines:::.__PipeOpImpute__initialize(...)
8. └─ParamSet$new(...)
9. └─paradox (local) initialize(...)
10. └─paradox:::.__ParamSet__initialize(...)
11. └─checkmate::assert_list(params, types = "Domain")
12. └─checkmate::checkList(...)
13. └─... %and% checkListTypes(x, types)
14. └─base::isTRUE(lhs)
── Error ('test_mlworkflow.R:21:1'): (code run outside of `test_that()`) ───────
Error in `initialize(...)`: object 'ParamUty' not found
Backtrace:
▆
1. └─PipeOpAmelia$new(parallel = FALSE) at test_mlworkflow.R:21:1
2. └─NADIA (local) initialize(...)
3. ├─super$initialize(...)
4. │ └─mlr3pipelines:::.__PipeOpImpute__initialize(...)
5. └─ParamSet$new(...)
6. └─paradox (local) initialize(...)
7. └─paradox:::.__ParamSet__initialize(...)
8. └─checkmate::assert_list(params, types = "Domain")
9. └─checkmate::checkList(...)
10. └─... %and% checkListTypes(x, types)
11. └─base::isTRUE(lhs)
── Error ('test_simplePipe.R:21:3'): Creting OOR_B ─────────────────────────────
Error in `initialize(...)`: object 'ParamLgl' not found
Backtrace:
▆
1. ├─testthat::expect_is(PipeOpOOR_B$new(), "PipeOpImpute") at test_simplePipe.R:21:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─PipeOpOOR_B$new()
5. └─NADIA (local) initialize(...)
6. └─ParamSet$new(...)
7. └─paradox (local) initialize(...)
8. └─paradox:::.__ParamSet__initialize(...)
9. └─checkmate::assert_list(params, types = "Domain")
10. └─checkmate::checkList(...)
11. └─... %and% checkListTypes(x, types)
12. └─base::isTRUE(lhs)
── Error ('test_simulateMissing.R:27:3'): PipeOpSimulatedMissing Tests ─────────
Error in `initialize(...)`: object 'ParamDbl' not found
Backtrace:
▆
1. ├─testthat::expect_true(...) at test_simulateMissing.R:27:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─PipeOpSimulateMissings$new()
5. └─NADIA (local) initialize(...)
6. └─ParamSet$new(...)
7. └─paradox (local) initialize(...)
8. └─paradox:::.__ParamSet__initialize(...)
9. └─checkmate::assert_list(params, types = "Domain")
10. └─checkmate::checkList(...)
11. └─... %and% checkListTypes(x, types)
12. └─base::isTRUE(lhs)
[ FAIL 5 | WARN 0 | SKIP 12 | PASS 47 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.4.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Errors_Statistic_and_Handling.Rmd’ using rmarkdown
Quitting from lines 96-105 [Lrn] (Errors_Statistic_and_Handling.Rmd)
Error: processing vignette 'Errors_Statistic_and_Handling.Rmd' failed with diagnostics:
object 'ParamDbl' not found
--- failed re-building ‘Errors_Statistic_and_Handling.Rmd’
--- re-building ‘NADIA_examples_and_motivation.Rmd’ using rmarkdown
Quitting from lines 116-132 [chunk1] (NADIA_examples_and_motivation.Rmd)
Error: processing vignette 'NADIA_examples_and_motivation.Rmd' failed with diagnostics:
object 'ParamDbl' not found
--- failed re-building ‘NADIA_examples_and_motivation.Rmd’
SUMMARY: processing the following files failed:
‘Errors_Statistic_and_Handling.Rmd’
‘NADIA_examples_and_motivation.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc