Last updated on 2024-06-11 16:49:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-0 | 17.20 | 1509.65 | 1526.85 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-0 | 13.96 | 1116.40 | 1130.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-0 | 1468.07 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-0 | 2145.99 | OK | |||
| r-devel-windows-x86_64 | 1.0-0 | 13.00 | 950.00 | 963.00 | OK | |
| r-patched-linux-x86_64 | 1.0-0 | 11.03 | 1539.58 | 1550.61 | OK | |
| r-release-linux-x86_64 | 1.0-0 | 10.22 | 1493.76 | 1503.98 | OK | |
| r-release-macos-arm64 | 1.0-0 | 376.00 | OK | |||
| r-release-macos-x86_64 | 1.0-0 | 1064.00 | OK | |||
| r-release-windows-x86_64 | 1.0-0 | 14.00 | 965.00 | 979.00 | OK | |
| r-oldrel-macos-arm64 | 1.0-0 | 341.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0-0 | 646.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0-0 | 18.00 | 646.00 | 664.00 | ERROR |
Version: 1.0-0
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [511s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(flocker)
>
> test_check("flocker")
Formatting data for a single-season occupancy model. For details, see make_flocker_data_static. All warnings and error messages should be interpreted in the context of make_flocker_data_static
Compiling Stan program...
Start sampling
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000512 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 5.12 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 1: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 1: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 1: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 1: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 1: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 1: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 1: Iteration: 8 / 8 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.003 seconds (Warm-up)
Chain 1: 0.005 seconds (Sampling)
Chain 1: 0.008 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000324 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 3.24 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 2: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 2: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 2: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 2: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 2: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 2: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 2: Iteration: 8 / 8 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.006 seconds (Warm-up)
Chain 2: 0.012 seconds (Sampling)
Chain 2: 0.018 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000316 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 3.16 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: WARNING: No variance estimation is
Chain 3: performed for num_warmup < 20
Chain 3:
Chain 3: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 3: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 3: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 3: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 3: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 3: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 3: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 3: Iteration: 8 / 8 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 0.02 seconds (Warm-up)
Chain 3: 0.017 seconds (Sampling)
Chain 3: 0.037 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000397 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 3.97 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: WARNING: No variance estimation is
Chain 4: performed for num_warmup < 20
Chain 4:
Chain 4: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 4: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 4: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 4: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 4: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 4: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 4: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 4: Iteration: 8 / 8 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 0.006 seconds (Warm-up)
Chain 4: 0.006 seconds (Sampling)
Chain 4: 0.012 seconds (Total)
Chain 4:
Formatting data for a single-season multispecies occupancy model with data augmentation for never-observed species. For details, see make_flocker_data_augmented. All warnings and error messages should be interpreted in the context of make_flocker_data_augmented
formatting rep indices
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Compiling Stan program...
Start sampling
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.003379 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 33.79 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 1: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 1: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 1: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 1: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 1: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 1: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 1: Iteration: 8 / 8 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.054 seconds (Warm-up)
Chain 1: 0.034 seconds (Sampling)
Chain 1: 0.088 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.00249 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 24.9 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 2: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 2: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 2: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 2: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 2: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 2: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 2: Iteration: 8 / 8 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.027 seconds (Warm-up)
Chain 2: 0.039 seconds (Sampling)
Chain 2: 0.066 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.002835 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 28.35 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: WARNING: No variance estimation is
Chain 3: performed for num_warmup < 20
Chain 3:
Chain 3: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 3: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 3: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 3: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 3: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 3: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 3: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 3: Iteration: 8 / 8 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 0.063 seconds (Warm-up)
Chain 3: 0.029 seconds (Sampling)
Chain 3: 0.092 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.001371 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 13.71 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: WARNING: No variance estimation is
Chain 4: performed for num_warmup < 20
Chain 4:
Chain 4: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 4: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 4: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 4: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 4: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 4: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 4: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 4: Iteration: 8 / 8 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 0.289 seconds (Warm-up)
Chain 4: 0.263 seconds (Sampling)
Chain 4: 0.552 seconds (Total)
Chain 4:
Formatting data for a multi-season occupancy model. For details, see make_flocker_data_dynamic. All warnings and error messages should be interpreted in the context of make_flocker_data_dynamic
formatting unit indices
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formatting rep indices
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Compiling Stan program...
Start sampling
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00119 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.9 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 1: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 1: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 1: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 1: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 1: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 1: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 1: Iteration: 8 / 8 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.013 seconds (Warm-up)
Chain 1: 0.005 seconds (Sampling)
Chain 1: 0.018 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000424 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 4.24 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 2: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 2: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 2: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 2: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 2: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 2: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 2: Iteration: 8 / 8 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.015 seconds (Warm-up)
Chain 2: 0.009 seconds (Sampling)
Chain 2: 0.024 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 0.000812 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 8.12 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: WARNING: No variance estimation is
Chain 3: performed for num_warmup < 20
Chain 3:
Chain 3: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 3: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 3: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 3: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 3: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 3: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 3: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 3: Iteration: 8 / 8 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 0.018 seconds (Warm-up)
Chain 3: 0.009 seconds (Sampling)
Chain 3: 0.027 seconds (Total)
Chain 3:
SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 0.000865 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 8.65 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: WARNING: No variance estimation is
Chain 4: performed for num_warmup < 20
Chain 4:
Chain 4: Iteration: 1 / 8 [ 12%] (Warmup)
Chain 4: Iteration: 2 / 8 [ 25%] (Warmup)
Chain 4: Iteration: 3 / 8 [ 37%] (Warmup)
Chain 4: Iteration: 4 / 8 [ 50%] (Warmup)
Chain 4: Iteration: 5 / 8 [ 62%] (Sampling)
Chain 4: Iteration: 6 / 8 [ 75%] (Sampling)
Chain 4: Iteration: 7 / 8 [ 87%] (Sampling)
Chain 4: Iteration: 8 / 8 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 0.015 seconds (Warm-up)
Chain 4: 0.013 seconds (Sampling)
Chain 4: 0.028 seconds (Total)
Chain 4:
Formatting data for a multi-season occupancy model. For details, see make_flocker_data_dynamic. All warnings and error messages should be interpreted in the context of make_flocker_data_dynamic
formatting unit indices
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formatting rep indices
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Compiling Stan program...
Error in `FUN()`:
! In path: "D:\\RCompile\\CRANpkg\\local\\4.3\\flocker.Rcheck\\tests\\testthat\\setup.R"
Caused by error in `compileCode()`:
! D:/temp/RtmpG4iuwb/RLIBS_f8b0701c64ab/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~cc1plus.exe: out of memory allocating 65536 bytesmake[1]: *** [D:/RCompile/recent/R-4.3.3/etc/x64/Makeconf:272: file29d807c345a53.o] Error 1
Backtrace:
▆
1. ├─testthat::test_check("flocker")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ ├─base::suppressWarnings(...) at D:\RCompile\CRANpkg\local\4.3\flocker.Rcheck\tests\testthat\setup.R:6:1
15. │ │ └─base::withCallingHandlers(...)
16. │ └─flocker::flock(...) at D:\RCompile\CRANpkg\local\4.3\flocker.Rcheck\tests\testthat\setup.R:72:3
17. │ └─flocker:::flock_(...)
18. │ └─flocker:::flocker_fit_code_util(...)
19. │ └─brms::brm(...)
20. │ └─brms::do_call(compile_model, compile_args)
21. │ └─brms:::eval2(call, envir = args, enclos = envir)
22. │ └─base::eval(expr, envir, ...)
23. │ └─base::eval(expr, envir, ...)
24. │ └─brms (local) .fun(...)
25. │ └─brms (local) .compile_model(model, ...)
26. │ ├─brms:::eval_silent(...)
27. │ │ └─base::eval(expr, envir)
28. │ │ └─base::eval(expr, envir)
29. │ └─brms::do_call(rstan::stan_model, args)
30. │ └─brms:::eval2(call, envir = args, enclos = envir)
31. │ └─base::eval(expr, envir, ...)
32. │ └─base::eval(expr, envir, ...)
33. │ └─rstan (local) .fun(model_code = .x1)
34. │ └─rstan:::cxxfunctionplus(...)
35. │ ├─pkgbuild::with_build_tools(...)
36. │ │ └─pkgbuild:::withr_with_path(rtools_path(), code)
37. │ │ └─base::force(code)
38. │ └─inline::cxxfunction(...)
39. │ └─inline:::compileCode(f, code, language = language, verbose = verbose)
40. │ └─base::stop(tail(errmsg))
41. └─base::.handleSimpleError(...)
42. └─testthat (local) h(simpleError(msg, call))
43. └─rlang::abort(...)
Error in `FUN()`:
! In path: "D:\\RCompile\\CRANpkg\\local\\4.3\\flocker.Rcheck\\tests\\testthat\\setup.R"
Caused by error in `sink()`:
! invalid connection
Backtrace:
▆
1. ├─testthat::test_check("flocker")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ ├─base::suppressWarnings(...) at D:\RCompile\CRANpkg\local\4.3\flocker.Rcheck\tests\testthat\setup.R:6:1
15. │ │ └─base::withCallingHandlers(...)
16. │ └─flocker::flock(...) at D:\RCompile\CRANpkg\local\4.3\flocker.Rcheck\tests\testthat\setup.R:72:3
17. │ └─flocker:::flock_(...)
18. │ └─flocker:::flocker_fit_code_util(...)
19. │ └─brms::brm(...)
20. │ └─brms::do_call(compile_model, compile_args)
21. │ └─brms:::eval2(call, envir = args, enclos = envir)
22. │ └─base::eval(expr, envir, ...)
23. │ └─base::eval(expr, envir, ...)
24. │ └─brms (local) .fun(...)
25. │ └─brms (local) .compile_model(model, ...)
26. │ ├─brms:::eval_silent(...)
27. │ │ └─base::eval(expr, envir)
28. │ │ └─base::eval(expr, envir)
29. │ └─brms::do_call(rstan::stan_model, args)
30. │ └─brms:::eval2(call, envir = args, enclos = envir)
31. │ └─base::eval(expr, envir, ...)
32. │ └─base::eval(expr, envir, ...)
33. │ └─rstan (local) .fun(model_code = .x1)
34. │ └─rstan:::cxxfunctionplus(...)
35. │ └─base::sink(type = "output")
36. └─base::.handleSimpleError(`<fn>`, "invalid connection", base::quote(sink(type = "output")))
37. └─testthat (local) h(simpleError(msg, call))
38. └─rlang::abort(...)
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 1.0-0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'augmented_models.Rmd' using rmarkdown
--- finished re-building 'augmented_models.Rmd'
--- re-building 'flocker_format.Rmd' using rmarkdown
--- finished re-building 'flocker_format.Rmd'
--- re-building 'flocker_tutorial.Rmd' using rmarkdown
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed: Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuf<fc>hren.
Error: processing vignette 'flocker_tutorial.Rmd' failed with diagnostics:
pandoc document conversion failed with error 251
--- failed re-building 'flocker_tutorial.Rmd'
During startup - Warning messages:
1: package 'utils' in options("defaultPackages") was not found
2: In .getClassesFromCache(Class) :
restarting interrupted promise evaluation
3: package 'stats' in options("defaultPackages") was not found
--- re-building 'multiseason_models.Rmd' using rmarkdown
Error: processing vignette 'multiseason_models.Rmd' failed with diagnostics:
'CreateProcess' failed to run 'C:\PROGRA~1\Pandoc\pandoc.exe --version'
--- failed re-building 'multiseason_models.Rmd'
--- re-building 'nonlinear_models.Rmd' using rmarkdown
--- finished re-building 'nonlinear_models.Rmd'
SUMMARY: processing the following files failed:
'flocker_tutorial.Rmd' 'multiseason_models.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64